Hb_000722_040

Information

Type -
Description -
Location Contig722: 164990-167356
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55694: 158605-165997 , PASA_asmbl_55696: 158605-165997 , PASA_asmbl_55699: 158605-166433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000722_040 0.0 - - -
2 Hb_003561_030 0.0631770841 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
3 Hb_000975_110 0.0690344571 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
4 Hb_000224_090 0.0824498452 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
5 Hb_000024_030 0.0868165523 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
6 Hb_001427_230 0.0895103255 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011161_050 0.0898394186 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
8 Hb_001307_090 0.0904591954 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
9 Hb_010172_030 0.09105793 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
10 Hb_130291_010 0.0913104837 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
11 Hb_148930_010 0.0928245906 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
12 Hb_007594_090 0.096490462 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_000272_070 0.0970225001 - - snare protein YKt [Hevea brasiliensis]
14 Hb_000329_330 0.0975149939 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_000163_130 0.0979226013 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
16 Hb_000922_100 0.0980774089 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
17 Hb_000398_160 0.1001865019 - - GDP-mannose transporter, putative [Ricinus communis]
18 Hb_001433_050 0.1005979199 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_001545_060 0.1007038117 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
20 Hb_000364_030 0.1012988728 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000722_040 Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000722_040--Hb_003561_030 Hb_000975_110 Hb_000975_110 Hb_000722_040--Hb_000975_110 Hb_000224_090 Hb_000224_090 Hb_000722_040--Hb_000224_090 Hb_000024_030 Hb_000024_030 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_011161_050 Hb_011161_050 Hb_000722_040--Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_003561_030--Hb_000975_110 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_000975_110--Hb_000024_030 Hb_000975_110--Hb_011161_050 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000069_100 Hb_000069_100 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_001427_230--Hb_001307_090 Hb_000398_160 Hb_000398_160 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_001427_230--Hb_124755_010 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01977 0.423957 0.209547 1.28951 0.965731 1.92878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15235 4.44958 3.07672 1.2975 0.33358

CAGE analysis