Hb_000723_030

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig723: 38742-47183
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09640g
description POPTRDRAFT_576733; hypothetical protein
nr
ID XP_012082420.1
description PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
swissprot
ID Q9FNY2
description Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1
trembl
ID A0A067JYW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16550 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription factor-like protein dpb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55746: 38756-47125
cDNA
(Sanger)
(ID:Location)		 005_J09.ab1: 44393-47122 , 006_O18.ab1: 44419-47122 , 008_J14.ab1: 44267-47122 , 023_L06.ab1: 46019-47122 , 030_B11.ab1: 44649-47122

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_030 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
2 Hb_004225_060 0.0530977881 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
3 Hb_000160_140 0.0601546178 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
4 Hb_002203_030 0.0629581456 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
5 Hb_001500_120 0.0699940812 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_003687_120 0.075942389 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
7 Hb_029622_120 0.0786179323 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
8 Hb_010287_020 0.0797436787 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
9 Hb_000476_060 0.0830830843 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_000975_210 0.0851059699 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
11 Hb_000230_460 0.0860169918 - - Speckle-type POZ protein, putative [Ricinus communis]
12 Hb_002110_160 0.0860196126 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
13 Hb_001439_220 0.0868017059 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
14 Hb_000176_020 0.0874081926 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
15 Hb_002716_060 0.0885769927 - - carboxylesterase np, putative [Ricinus communis]
16 Hb_003470_040 0.0896742642 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
17 Hb_000207_200 0.0901575881 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
18 Hb_010775_030 0.090345634 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
19 Hb_000868_120 0.0916542284 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
20 Hb_000282_090 0.0919678912 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_030 Hb_000723_030 Hb_004225_060 Hb_004225_060 Hb_000723_030--Hb_004225_060 Hb_000160_140 Hb_000160_140 Hb_000723_030--Hb_000160_140 Hb_002203_030 Hb_002203_030 Hb_000723_030--Hb_002203_030 Hb_001500_120 Hb_001500_120 Hb_000723_030--Hb_001500_120 Hb_003687_120 Hb_003687_120 Hb_000723_030--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_000723_030--Hb_029622_120 Hb_004225_060--Hb_000160_140 Hb_004225_060--Hb_001500_120 Hb_004225_060--Hb_002203_030 Hb_004225_060--Hb_003687_120 Hb_004225_060--Hb_029622_120 Hb_000160_140--Hb_002203_030 Hb_000230_460 Hb_000230_460 Hb_000160_140--Hb_000230_460 Hb_010287_020 Hb_010287_020 Hb_000160_140--Hb_010287_020 Hb_000137_010 Hb_000137_010 Hb_000160_140--Hb_000137_010 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_002203_030--Hb_000230_460 Hb_005977_030 Hb_005977_030 Hb_001500_120--Hb_005977_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_000537_100 Hb_000537_100 Hb_029622_120--Hb_000537_100 Hb_007558_090 Hb_007558_090 Hb_029622_120--Hb_007558_090 Hb_005946_040 Hb_005946_040 Hb_029622_120--Hb_005946_040 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24459 3.96977 5.75791 2.58817 1.28371 1.50499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50618 2.7652 1.99472 2.79288 3.21503

CAGE analysis