Hb_000723_080

Information

Type -
Description -
Location Contig723: 102554-103630
Sequence    

Annotation

kegg
ID rcu:RCOM_1355250
description hypothetical protein
nr
ID XP_012082405.1
description PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
swissprot
ID Q9SYZ9
description Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 PE=1 SV=1
trembl
ID A0A067KA37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16539 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_080 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
2 Hb_008695_100 0.0597404331 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
3 Hb_000567_120 0.0712849523 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
4 Hb_002256_020 0.0740968356 - - conserved hypothetical protein [Ricinus communis]
5 Hb_016901_010 0.0780902683 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
6 Hb_001140_220 0.0804903701 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_005289_030 0.0805857196 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_002235_280 0.0823873013 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
9 Hb_001699_130 0.082399907 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
10 Hb_004846_070 0.0897089755 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
11 Hb_010608_050 0.0897385467 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
12 Hb_000258_270 0.090046882 - - PREDICTED: cullin-3A [Jatropha curcas]
13 Hb_007747_200 0.090711837 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
14 Hb_000928_210 0.0913853985 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
15 Hb_000373_130 0.092938064 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_000000_250 0.0931437783 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
17 Hb_004607_030 0.0934796751 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
18 Hb_001373_180 0.094140566 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
19 Hb_000617_150 0.0946060941 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
20 Hb_008695_210 0.0946220075 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_080 Hb_000723_080 Hb_008695_100 Hb_008695_100 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_008695_100--Hb_000567_120 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_000567_120--Hb_001140_220 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_000928_210 Hb_000928_210 Hb_002256_020--Hb_000928_210 Hb_000230_510 Hb_000230_510 Hb_002256_020--Hb_000230_510 Hb_008623_020 Hb_008623_020 Hb_002256_020--Hb_008623_020 Hb_004306_100 Hb_004306_100 Hb_002256_020--Hb_004306_100 Hb_000732_130 Hb_000732_130 Hb_002256_020--Hb_000732_130 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_001140_220--Hb_002235_280 Hb_001140_220--Hb_000258_270 Hb_001140_220--Hb_008695_100 Hb_006117_070 Hb_006117_070 Hb_005289_030--Hb_006117_070 Hb_005289_030--Hb_000230_510 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_000058_060 Hb_000058_060 Hb_005289_030--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_002759_060 Hb_002759_060 Hb_005289_030--Hb_002759_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63259 9.91841 2.51777 6.70196 7.84939 12.3315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5661 18.6948 21.9933 6.80437 9.27322

CAGE analysis