Hb_000723_130

Information

Type desease resistance
Description Gene Name: CDC48_N
Location Contig723: 150844-157197
Sequence    

Annotation

kegg
ID rcu:RCOM_1355070
description Transitional endoplasmic reticulum ATPase, putative (EC:3.6.4.3)
nr
ID AHA83580.1
description cell division cycle protein 48 [Hevea brasiliensis]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID A0A0A7A593
description Cell division cycle protein 48 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55762: 148454-150177 , PASA_asmbl_55763: 150967-157150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_130 0.0 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
2 Hb_002311_040 0.0550096368 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
3 Hb_006915_030 0.0697769513 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
4 Hb_000571_110 0.0770182091 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
5 Hb_009548_020 0.0785848778 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_002942_100 0.0811602156 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
7 Hb_000832_020 0.0833885646 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
8 Hb_000032_100 0.0847457045 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
9 Hb_003976_030 0.0875640603 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
10 Hb_001198_100 0.0887824984 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
11 Hb_004684_010 0.0899297643 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
12 Hb_000072_220 0.0910502326 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
13 Hb_028089_010 0.0913293256 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
14 Hb_000092_010 0.093465491 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
15 Hb_002835_370 0.093826187 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
16 Hb_004052_090 0.0939752687 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
17 Hb_105105_020 0.0948654076 - - vacuolar protein sorting vps41, putative [Ricinus communis]
18 Hb_009178_030 0.0949560431 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000258_270 0.0955207968 - - PREDICTED: cullin-3A [Jatropha curcas]
20 Hb_005348_140 0.0958027386 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000723_130 Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000723_130--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_000723_130--Hb_006915_030 Hb_000571_110 Hb_000571_110 Hb_000723_130--Hb_000571_110 Hb_009548_020 Hb_009548_020 Hb_000723_130--Hb_009548_020 Hb_002942_100 Hb_002942_100 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_002311_040--Hb_002942_100 Hb_004684_010 Hb_004684_010 Hb_002311_040--Hb_004684_010 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_008500_010 Hb_008500_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_006915_030--Hb_002942_100 Hb_006915_030--Hb_000571_110 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050 Hb_028089_010 Hb_028089_010 Hb_000571_110--Hb_028089_010 Hb_000571_110--Hb_009548_020 Hb_000723_200 Hb_000723_200 Hb_000571_110--Hb_000723_200 Hb_012022_090 Hb_012022_090 Hb_000571_110--Hb_012022_090 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_009548_020--Hb_012022_090 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.8548 57.5251 37.0779 56.3487 56.8331 106.65
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.8311 49.0024 135.933 54.2898 54.5735

CAGE analysis