Hb_000723_160

Information

Type transcription factor
Description TF Family: TCP
Location Contig723: 171783-172385
Sequence    

Annotation

kegg
ID rcu:RCOM_1355270
description hypothetical protein
nr
ID XP_012082393.1
description PREDICTED: transcription factor TCP11 [Jatropha curcas]
swissprot
ID Q9SJK7
description Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1
trembl
ID A0A067JZ18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_160 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
2 Hb_000003_050 0.1239588276 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
3 Hb_000196_090 0.1464588984 - - axonemal dynein light chain, putative [Ricinus communis]
4 Hb_001619_080 0.1501453991 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006816_450 0.1524245721 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000436_010 0.1555103421 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
7 Hb_001329_210 0.1580082014 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_003878_030 0.1650183315 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
9 Hb_001538_140 0.1651826662 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
10 Hb_001278_050 0.1654821141 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
11 Hb_007161_010 0.166046993 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
12 Hb_002301_230 0.1672336235 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
13 Hb_002794_030 0.169182714 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
14 Hb_002138_010 0.1692550991 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
15 Hb_000432_050 0.1693889931 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
16 Hb_003504_020 0.1725707848 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
17 Hb_000836_080 0.1739029271 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
18 Hb_009486_190 0.1747339249 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002540_030 0.1758611808 - - hypothetical protein 32 [Hevea brasiliensis]
20 Hb_088202_010 0.1766136174 - - hypothetical protein JCGZ_13241 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_160 Hb_000723_160 Hb_000003_050 Hb_000003_050 Hb_000723_160--Hb_000003_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_001619_080 Hb_001619_080 Hb_000723_160--Hb_001619_080 Hb_006816_450 Hb_006816_450 Hb_000723_160--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_001969_090 Hb_001969_090 Hb_000003_050--Hb_001969_090 Hb_000317_280 Hb_000317_280 Hb_000003_050--Hb_000317_280 Hb_000406_120 Hb_000406_120 Hb_000003_050--Hb_000406_120 Hb_009510_040 Hb_009510_040 Hb_000003_050--Hb_009510_040 Hb_000503_050 Hb_000503_050 Hb_000003_050--Hb_000503_050 Hb_002794_030 Hb_002794_030 Hb_000196_090--Hb_002794_030 Hb_002540_030 Hb_002540_030 Hb_000196_090--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_000196_090--Hb_002609_280 Hb_007672_010 Hb_007672_010 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_000196_090--Hb_001329_210 Hb_003052_220 Hb_003052_220 Hb_001619_080--Hb_003052_220 Hb_001619_080--Hb_000003_050 Hb_001619_080--Hb_009510_040 Hb_000243_140 Hb_000243_140 Hb_001619_080--Hb_000243_140 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_001100_010 Hb_001100_010 Hb_000436_010--Hb_001100_010 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_002078_460 Hb_002078_460 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_001329_210--Hb_002540_030 Hb_007666_020 Hb_007666_020 Hb_001329_210--Hb_007666_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95765 3.46079 0.741809 0.668548 1.18191 4.67289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7246 10.1617 14.2009 7.07257 0.152566

CAGE analysis