Hb_000723_190

Information

Type -
Description -
Location Contig723: 184180-188589
Sequence    

Annotation

kegg
ID rcu:RCOM_1355390
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.12.2)
nr
ID XP_002519512.1
description Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9S0J3
description Protein kinase APK1A, chloroplast, putative OS=Ricinus communis GN=RCOM_1355390 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g47070 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55768: 187285-188460 , PASA_asmbl_55769: 188488-188868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_190 0.0 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
2 Hb_001894_170 0.1291303664 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
3 Hb_002759_240 0.1360366509 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
4 Hb_002182_090 0.1401889209 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
5 Hb_005539_240 0.1418599446 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
6 Hb_000252_130 0.1449074946 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
7 Hb_000432_050 0.1455848478 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
8 Hb_000368_060 0.1459954034 - - thioredoxin H-type 6 [Hevea brasiliensis]
9 Hb_003581_260 0.148868439 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
10 Hb_029510_040 0.1496441356 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
11 Hb_006594_020 0.1516409852 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
12 Hb_000836_130 0.1544622205 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
13 Hb_000530_070 0.1573967328 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
14 Hb_005614_050 0.1601261345 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
15 Hb_017434_050 0.1606619443 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
16 Hb_000562_040 0.1614821555 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_000454_070 0.1618055177 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
18 Hb_002239_060 0.1626878079 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
19 Hb_001846_070 0.1661865676 - - PREDICTED: fructokinase-1 [Jatropha curcas]
20 Hb_000963_140 0.1664001828 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000723_190 Hb_000723_190 Hb_001894_170 Hb_001894_170 Hb_000723_190--Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_001894_170--Hb_002759_240 Hb_017434_050 Hb_017434_050 Hb_001894_170--Hb_017434_050 Hb_000264_020 Hb_000264_020 Hb_001894_170--Hb_000264_020 Hb_000373_180 Hb_000373_180 Hb_001894_170--Hb_000373_180 Hb_006594_020 Hb_006594_020 Hb_001894_170--Hb_006594_020 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_001279_130 Hb_001279_130 Hb_002182_090--Hb_001279_130 Hb_001268_080 Hb_001268_080 Hb_002182_090--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_002182_090--Hb_072912_020 Hb_002603_150 Hb_002603_150 Hb_002182_090--Hb_002603_150 Hb_000215_180 Hb_000215_180 Hb_002182_090--Hb_000215_180 Hb_000368_060 Hb_000368_060 Hb_005539_240--Hb_000368_060 Hb_001232_130 Hb_001232_130 Hb_005539_240--Hb_001232_130 Hb_008931_010 Hb_008931_010 Hb_005539_240--Hb_008931_010 Hb_000061_300 Hb_000061_300 Hb_005539_240--Hb_000061_300 Hb_001575_020 Hb_001575_020 Hb_005539_240--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_005539_240--Hb_001616_060 Hb_002820_010 Hb_002820_010 Hb_000252_130--Hb_002820_010 Hb_003642_050 Hb_003642_050 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000116_420 Hb_000116_420 Hb_000252_130--Hb_000116_420 Hb_000252_130--Hb_001894_170 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64766 0.602795 1.35737 2.58498 3.3086 1.71524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9163 21.8196 28.378 8.8422 3.92178

CAGE analysis