Hb_000723_230

Information

Type -
Description -
Location Contig723: 218205-222821
Sequence    

Annotation

kegg
ID cic:CICLE_v10011936mg
description hypothetical protein
nr
ID KDO50670.1
description hypothetical protein CISIN_1g017413mg [Citrus sinensis]
swissprot
ID Q945K7
description Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=2 SV=1
trembl
ID A0A067E9Z4
description Isocitrate dehydrogenase [NAD] subunit, mitochondrial OS=Citrus sinensis GN=CISIN_1g017413mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55776: 218218-222784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_230 0.0 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
2 Hb_006637_030 0.0600409311 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
3 Hb_005653_070 0.0813025128 - - K+ transport growth defect-like protein [Hevea brasiliensis]
4 Hb_001728_040 0.0838616518 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
5 Hb_000465_300 0.0838949424 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
6 Hb_000684_040 0.0868389126 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
7 Hb_006060_020 0.0918458546 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
8 Hb_000964_030 0.0933652752 - - ADP/ATP carrier 2 [Theobroma cacao]
9 Hb_053709_050 0.0944275931 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_004005_020 0.0984283757 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_189216_010 0.0994365851 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
12 Hb_000365_270 0.0996356541 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
13 Hb_163256_020 0.1000477751 - - fructokinase [Manihot esculenta]
14 Hb_002045_070 0.1004246862 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
15 Hb_004429_020 0.1014743313 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
16 Hb_001016_100 0.1016452602 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
17 Hb_002303_020 0.1016516205 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
18 Hb_007218_120 0.1016711411 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
19 Hb_000749_050 0.1018733141 - - mitochondrial thioredoxin [Hevea brasiliensis]
20 Hb_010578_080 0.102146136 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]

Gene co-expression network

sample Hb_000723_230 Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_002693_030 Hb_002693_030 Hb_006637_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_006637_030--Hb_053709_050 Hb_026198_010 Hb_026198_010 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_006637_030--Hb_005653_070 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_005653_070--Hb_189216_010 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_000749_050 Hb_000749_050 Hb_000465_300--Hb_000749_050 Hb_000173_470 Hb_000173_470 Hb_000465_300--Hb_000173_470 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000890_150 Hb_000890_150 Hb_000465_300--Hb_000890_150 Hb_002045_070 Hb_002045_070 Hb_000465_300--Hb_002045_070 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_000347_450 Hb_000347_450 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_006643_020 Hb_006643_020 Hb_006060_020--Hb_006643_020 Hb_006060_020--Hb_006637_030 Hb_006060_020--Hb_026198_010 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91977 26.0651 30.695 32.583 8.36161 8.79162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8598 33.9424 23.4118 26.0023 17.5202

CAGE analysis