Hb_000723_240

Information

Type -
Description -
Location Contig723: 224337-227603
Sequence    

Annotation

kegg
ID rcu:RCOM_1355480
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID AAK60275.1
description phenylalanine ammonia-lyase 2 [Manihot esculenta]
swissprot
ID P45730
description Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1
trembl
ID Q94F89
description Phenylalanine ammonia-lyase OS=Manihot esculenta GN=PAL2 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55777: 224440-227580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_240 0.0 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
2 Hb_003160_050 0.0573999038 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_000834_210 0.0719284155 - - unnamed protein product [Vitis vinifera]
4 Hb_007313_010 0.0744568916 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
5 Hb_008418_010 0.08578834 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
6 Hb_001922_010 0.0936125191 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
7 Hb_000589_100 0.0958700653 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_003768_100 0.0980114589 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
9 Hb_028927_010 0.1014688343 - - leucine-rich repeat protein, putative [Ricinus communis]
10 Hb_011861_020 0.10458429 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
11 Hb_001545_270 0.1079094618 - - laccase, putative [Ricinus communis]
12 Hb_007017_120 0.1167935776 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
13 Hb_000005_350 0.117816104 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
14 Hb_000057_180 0.1211548691 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
15 Hb_164283_010 0.1212302288 - - hypothetical protein RCOM_0725500 [Ricinus communis]
16 Hb_006618_080 0.1268049239 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
17 Hb_000139_500 0.1275789587 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
18 Hb_000471_010 0.1303970081 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000684_490 0.1333048857 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
20 Hb_008066_060 0.1363927097 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_240 Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_003160_050--Hb_000834_210 Hb_003160_050--Hb_007313_010 Hb_003768_100 Hb_003768_100 Hb_003160_050--Hb_003768_100 Hb_000139_500 Hb_000139_500 Hb_003160_050--Hb_000139_500 Hb_002003_010 Hb_002003_010 Hb_003160_050--Hb_002003_010 Hb_000834_210--Hb_007313_010 Hb_000834_210--Hb_002003_010 Hb_011861_020 Hb_011861_020 Hb_000834_210--Hb_011861_020 Hb_000057_180 Hb_000057_180 Hb_000834_210--Hb_000057_180 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_003734_120 Hb_003734_120 Hb_007313_010--Hb_003734_120 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_006637_040 Hb_006637_040 Hb_008418_010--Hb_006637_040 Hb_008418_010--Hb_001922_010 Hb_008418_010--Hb_003768_100 Hb_001545_270 Hb_001545_270 Hb_001922_010--Hb_001545_270 Hb_032631_080 Hb_032631_080 Hb_001922_010--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_001922_010--Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001922_010--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_000589_100--Hb_000005_350 Hb_000589_100--Hb_011861_020 Hb_028927_010 Hb_028927_010 Hb_000589_100--Hb_028927_010 Hb_000025_740 Hb_000025_740 Hb_000589_100--Hb_000025_740 Hb_000589_100--Hb_001691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.040274 33.0307 90.9074 120.657 0.03598 0.0928905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174487 0.0411906 0.392717 356.96 43.8474

CAGE analysis