Hb_000723_290

Information

Type -
Description -
Location Contig723: 305839-310497
Sequence    

Annotation

kegg
ID rcu:RCOM_1355600
description calcium lipid binding protein, putative
nr
ID XP_002519523.1
description calcium lipid binding protein, putative [Ricinus communis]
swissprot
ID Q7XA06
description Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1
trembl
ID B9S0K4
description Calcium lipid binding protein, putative OS=Ricinus communis GN=RCOM_1355600 PE=4 SV=1
Gene Ontology
ID GO:0016126
description calcium lipid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_290 0.0 - - calcium lipid binding protein, putative [Ricinus communis]
2 Hb_010577_040 0.0854956139 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
3 Hb_004109_160 0.0861993685 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
4 Hb_000167_050 0.1059437895 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
5 Hb_000365_370 0.1096268109 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_180 0.1165079227 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
7 Hb_000176_010 0.1172237377 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
8 Hb_009780_050 0.1188044737 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
9 Hb_020378_060 0.1206424678 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_005846_030 0.1243222536 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
11 Hb_003935_080 0.1251737995 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
12 Hb_005489_090 0.1267905631 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
13 Hb_001789_200 0.126930576 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
14 Hb_002078_300 0.1293703851 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
15 Hb_007632_170 0.1300328266 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
16 Hb_005725_220 0.1302798453 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
17 Hb_003453_050 0.1320798051 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
18 Hb_000254_140 0.1365402571 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
19 Hb_000622_290 0.1382756709 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
20 Hb_002053_010 0.1403218638 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000723_290 Hb_000723_290 Hb_010577_040 Hb_010577_040 Hb_000723_290--Hb_010577_040 Hb_004109_160 Hb_004109_160 Hb_000723_290--Hb_004109_160 Hb_000167_050 Hb_000167_050 Hb_000723_290--Hb_000167_050 Hb_000365_370 Hb_000365_370 Hb_000723_290--Hb_000365_370 Hb_001124_180 Hb_001124_180 Hb_000723_290--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000723_290--Hb_000176_010 Hb_003935_080 Hb_003935_080 Hb_010577_040--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_010577_040--Hb_005489_090 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_000594_100 Hb_000594_100 Hb_010577_040--Hb_000594_100 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_002078_300 Hb_002078_300 Hb_004109_160--Hb_002078_300 Hb_004109_160--Hb_001621_060 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_005846_030 Hb_005846_030 Hb_000167_050--Hb_005846_030 Hb_000167_050--Hb_000176_010 Hb_003453_050 Hb_003453_050 Hb_000365_370--Hb_003453_050 Hb_000365_370--Hb_000167_050 Hb_000107_510 Hb_000107_510 Hb_000365_370--Hb_000107_510 Hb_000365_370--Hb_010577_040 Hb_004128_070 Hb_004128_070 Hb_000365_370--Hb_004128_070 Hb_001124_180--Hb_005489_090 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_000176_010--Hb_009780_050 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102038 0.0553301 0.455352 0.615705 0.0479888 0.168231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253615 0.532094 0.33432 0.13259 1.16368

CAGE analysis