Hb_000723_310

Information

Type -
Description -
Location Contig723: 312717-313848
Sequence    

Annotation

kegg
ID rcu:RCOM_0760970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002530985.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZUU3
description Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
trembl
ID B9SYB6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0760970 PE=4 SV=1
Gene Ontology
ID GO:0009534
description pentatricopeptide repeat-containing protein at2g37230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_310 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001221_380 0.1703170227 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
3 Hb_007477_090 0.1880912121 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
4 Hb_029580_010 0.1913554808 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
5 Hb_011310_060 0.1921077142 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
6 Hb_000777_060 0.201424488 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008557_020 0.2021559971 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
8 Hb_000190_060 0.2026910481 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
9 Hb_004204_190 0.204802314 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
10 Hb_005348_080 0.2068395581 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
11 Hb_007441_180 0.2080817105 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001214_030 0.2083352799 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
13 Hb_000061_480 0.2089013077 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
14 Hb_151930_020 0.2094545616 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
15 Hb_001220_040 0.2099379929 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
16 Hb_002293_030 0.2119340979 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
17 Hb_171900_050 0.2168509538 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000369_090 0.2169065021 - - -
19 Hb_000326_010 0.2192839499 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
20 Hb_001104_120 0.2227990458 - - -

Gene co-expression network

sample Hb_000723_310 Hb_000723_310 Hb_001221_380 Hb_001221_380 Hb_000723_310--Hb_001221_380 Hb_007477_090 Hb_007477_090 Hb_000723_310--Hb_007477_090 Hb_029580_010 Hb_029580_010 Hb_000723_310--Hb_029580_010 Hb_011310_060 Hb_011310_060 Hb_000723_310--Hb_011310_060 Hb_000777_060 Hb_000777_060 Hb_000723_310--Hb_000777_060 Hb_008557_020 Hb_008557_020 Hb_000723_310--Hb_008557_020 Hb_001616_020 Hb_001616_020 Hb_001221_380--Hb_001616_020 Hb_000061_480 Hb_000061_480 Hb_001221_380--Hb_000061_480 Hb_151930_020 Hb_151930_020 Hb_001221_380--Hb_151930_020 Hb_001221_380--Hb_007477_090 Hb_002876_360 Hb_002876_360 Hb_001221_380--Hb_002876_360 Hb_007477_090--Hb_151930_020 Hb_007477_090--Hb_000777_060 Hb_004055_060 Hb_004055_060 Hb_007477_090--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_007477_090--Hb_001279_250 Hb_010362_020 Hb_010362_020 Hb_007477_090--Hb_010362_020 Hb_000853_360 Hb_000853_360 Hb_007477_090--Hb_000853_360 Hb_001792_080 Hb_001792_080 Hb_029580_010--Hb_001792_080 Hb_000096_060 Hb_000096_060 Hb_029580_010--Hb_000096_060 Hb_000243_010 Hb_000243_010 Hb_029580_010--Hb_000243_010 Hb_029580_010--Hb_000777_060 Hb_029580_010--Hb_011310_060 Hb_002293_030 Hb_002293_030 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_000061_160 Hb_000061_160 Hb_000777_060--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_000777_060--Hb_001621_180 Hb_000330_170 Hb_000330_170 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_007441_180 Hb_007441_180 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_008557_020--Hb_001279_250 Hb_008557_020--Hb_001621_180 Hb_001266_050 Hb_001266_050 Hb_008557_020--Hb_001266_050 Hb_150299_030 Hb_150299_030 Hb_008557_020--Hb_150299_030 Hb_008557_020--Hb_001252_140 Hb_000052_010 Hb_000052_010 Hb_008557_020--Hb_000052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150037 0.0699906 0.153039 0.0647973 1.76584 0.938083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46475 2.59224 0.53288 0.115611 0.148134

CAGE analysis