Hb_000723_320

Information

Type -
Description -
Location Contig723: 315506-321499
Sequence    

Annotation

kegg
ID tcc:TCM_022171
description Cyclic nucleotide-gated channel 15 isoform 1
nr
ID XP_012082368.1
description PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
swissprot
ID Q9SL29
description Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1
trembl
ID A0A061ESN5
description Cyclic nucleotide-gated channel 15 isoform 1 OS=Theobroma cacao GN=TCM_022171 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55781: 315512-317879 , PASA_asmbl_55782: 315640-317872 , PASA_asmbl_55783: 319380-319699 , PASA_asmbl_55784: 321498-321717
cDNA
(Sanger)
(ID:Location)		 051_D06.ab1: 315512-316710 , 053_L11.ab1: 315510-316698

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_320 0.0 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
2 Hb_000359_160 0.1077591076 - - PREDICTED: protein CAJ1 [Jatropha curcas]
3 Hb_010721_020 0.1148017489 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
4 Hb_002475_060 0.118015043 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
5 Hb_003605_060 0.1192690892 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
6 Hb_000208_270 0.1234244916 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
7 Hb_009393_140 0.1250303304 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
8 Hb_000679_320 0.1257990693 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
9 Hb_005523_040 0.126273468 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
10 Hb_000002_300 0.1270843866 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
11 Hb_000898_090 0.1281253033 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
12 Hb_074548_010 0.1286157206 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000856_280 0.1295151819 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
14 Hb_022693_020 0.1310004899 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_001541_280 0.1317301326 - - phosphate transporter [Manihot esculenta]
16 Hb_000193_220 0.1322427878 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
17 Hb_001377_060 0.1324165621 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
18 Hb_002814_010 0.1331155266 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
19 Hb_001257_110 0.1363886974 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
20 Hb_000317_180 0.1368437673 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000723_320 Hb_000723_320 Hb_000359_160 Hb_000359_160 Hb_000723_320--Hb_000359_160 Hb_010721_020 Hb_010721_020 Hb_000723_320--Hb_010721_020 Hb_002475_060 Hb_002475_060 Hb_000723_320--Hb_002475_060 Hb_003605_060 Hb_003605_060 Hb_000723_320--Hb_003605_060 Hb_000208_270 Hb_000208_270 Hb_000723_320--Hb_000208_270 Hb_009393_140 Hb_009393_140 Hb_000723_320--Hb_009393_140 Hb_004979_050 Hb_004979_050 Hb_000359_160--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_000359_160--Hb_000679_320 Hb_000359_160--Hb_009393_140 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_000193_220 Hb_000193_220 Hb_010721_020--Hb_000193_220 Hb_002811_250 Hb_002811_250 Hb_010721_020--Hb_002811_250 Hb_000118_090 Hb_000118_090 Hb_010721_020--Hb_000118_090 Hb_007982_040 Hb_007982_040 Hb_010721_020--Hb_007982_040 Hb_000045_050 Hb_000045_050 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_001195_290 Hb_001195_290 Hb_002475_060--Hb_001195_290 Hb_021531_010 Hb_021531_010 Hb_002475_060--Hb_021531_010 Hb_002235_070 Hb_002235_070 Hb_002475_060--Hb_002235_070 Hb_005523_040 Hb_005523_040 Hb_002475_060--Hb_005523_040 Hb_001946_120 Hb_001946_120 Hb_002475_060--Hb_001946_120 Hb_002485_050 Hb_002485_050 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_003605_060--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000787_210 Hb_000787_210 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000208_270--Hb_002814_010 Hb_009393_140--Hb_000679_320 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_006472_040 Hb_006472_040 Hb_009393_140--Hb_006472_040 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.827786 8.01697 26.2817 16.345 2.7722 0.760325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33135 2.47835 0.0843291 3.77828 70.3821

CAGE analysis