Hb_000724_010

Information

Type -
Description -
Location Contig724: 3262-5307
Sequence    

Annotation

kegg
ID rcu:RCOM_1267370
description hypothetical protein
nr
ID XP_011037029.1
description PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SX33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000724_010 0.0 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
2 Hb_001031_100 0.0005157404 - - -
3 Hb_080359_020 0.0007041437 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
4 Hb_027556_050 0.0008687204 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
5 Hb_000345_090 0.0013698737 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
6 Hb_002596_100 0.0015688932 - - -
7 Hb_003687_050 0.001707067 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000441_240 0.0022511771 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
9 Hb_001031_070 0.0024430273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
10 Hb_071079_030 0.0028309701 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
11 Hb_000705_320 0.0040593927 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
12 Hb_000938_010 0.004082713 - - polyprotein [Oryza australiensis]
13 Hb_159542_010 0.006602396 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_005625_030 0.0071143136 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
15 Hb_070810_010 0.0072834114 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_000696_180 0.0080521275 - - cysteine protease, putative [Ricinus communis]
17 Hb_001048_120 0.0109896467 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_011444_050 0.0110540248 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_000329_240 0.0115689537 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
20 Hb_073174_010 0.0118064005 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]

Gene co-expression network

sample Hb_000724_010 Hb_000724_010 Hb_001031_100 Hb_001031_100 Hb_000724_010--Hb_001031_100 Hb_080359_020 Hb_080359_020 Hb_000724_010--Hb_080359_020 Hb_027556_050 Hb_027556_050 Hb_000724_010--Hb_027556_050 Hb_000345_090 Hb_000345_090 Hb_000724_010--Hb_000345_090 Hb_002596_100 Hb_002596_100 Hb_000724_010--Hb_002596_100 Hb_003687_050 Hb_003687_050 Hb_000724_010--Hb_003687_050 Hb_001031_100--Hb_002596_100 Hb_001031_100--Hb_003687_050 Hb_001031_100--Hb_080359_020 Hb_001031_100--Hb_027556_050 Hb_000441_240 Hb_000441_240 Hb_001031_100--Hb_000441_240 Hb_080359_020--Hb_027556_050 Hb_080359_020--Hb_000345_090 Hb_080359_020--Hb_002596_100 Hb_080359_020--Hb_003687_050 Hb_027556_050--Hb_000345_090 Hb_027556_050--Hb_002596_100 Hb_027556_050--Hb_003687_050 Hb_000345_090--Hb_001031_100 Hb_000705_320 Hb_000705_320 Hb_000345_090--Hb_000705_320 Hb_000345_090--Hb_002596_100 Hb_002596_100--Hb_003687_050 Hb_002596_100--Hb_000441_240 Hb_001031_070 Hb_001031_070 Hb_002596_100--Hb_001031_070 Hb_071079_030 Hb_071079_030 Hb_002596_100--Hb_071079_030 Hb_003687_050--Hb_000441_240 Hb_003687_050--Hb_001031_070 Hb_003687_050--Hb_071079_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0257768 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0251568 0

CAGE analysis