Hb_000724_020

Information

Type transcription factor
Description TF Family: PHD
Location Contig724: 20128-24526
Sequence    

Annotation

kegg
ID rcu:RCOM_1460410
description Histone-lysine N-methyltransferase ATXR6, putative (EC:2.1.1.43)
nr
ID XP_012086084.1
description PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
swissprot
ID B9RU15
description Probable Histone-lysine N-methyltransferase ATXR5 OS=Ricinus communis GN=ATXR5 PE=1 SV=1
trembl
ID A0A067JQG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22238 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable histone-lysine n-methyltransferase atxr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55807: 20131-20659 , PASA_asmbl_55808: 23769-24397 , PASA_asmbl_55809: 20660-24000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000724_020 0.0 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
2 Hb_004032_370 0.0624280947 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
3 Hb_004109_120 0.0763082727 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
4 Hb_004096_060 0.0786773662 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
5 Hb_001053_190 0.0814151734 - - ADP,ATP carrier protein, putative [Ricinus communis]
6 Hb_003228_100 0.0889095728 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
7 Hb_000579_080 0.0899323117 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
8 Hb_012438_030 0.0910232559 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_000739_240 0.0911170703 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_016448_010 0.0911417613 - - Protein MYG1, putative [Ricinus communis]
11 Hb_025668_010 0.091688754 - - unnamed protein product [Coffea canephora]
12 Hb_007483_070 0.0918391199 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
13 Hb_001504_010 0.0921728362 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
14 Hb_002684_020 0.0968801994 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_033642_040 0.0977152894 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_168893_030 0.0982011464 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
17 Hb_000029_400 0.0987852635 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
18 Hb_000163_260 0.0998984184 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
19 Hb_077026_010 0.1009884341 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
20 Hb_000254_100 0.1011122742 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000724_020 Hb_000724_020 Hb_004032_370 Hb_004032_370 Hb_000724_020--Hb_004032_370 Hb_004109_120 Hb_004109_120 Hb_000724_020--Hb_004109_120 Hb_004096_060 Hb_004096_060 Hb_000724_020--Hb_004096_060 Hb_001053_190 Hb_001053_190 Hb_000724_020--Hb_001053_190 Hb_003228_100 Hb_003228_100 Hb_000724_020--Hb_003228_100 Hb_000579_080 Hb_000579_080 Hb_000724_020--Hb_000579_080 Hb_004032_370--Hb_004096_060 Hb_002870_020 Hb_002870_020 Hb_004032_370--Hb_002870_020 Hb_004032_370--Hb_003228_100 Hb_002326_110 Hb_002326_110 Hb_004032_370--Hb_002326_110 Hb_077026_010 Hb_077026_010 Hb_004032_370--Hb_077026_010 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_000254_100 Hb_000254_100 Hb_004109_120--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_004109_120--Hb_001824_080 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_025668_010 Hb_025668_010 Hb_004096_060--Hb_025668_010 Hb_001002_060 Hb_001002_060 Hb_004096_060--Hb_001002_060 Hb_004096_060--Hb_002326_110 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_003228_100--Hb_002870_020 Hb_006846_170 Hb_006846_170 Hb_003228_100--Hb_006846_170 Hb_003228_100--Hb_002326_110 Hb_002249_020 Hb_002249_020 Hb_003228_100--Hb_002249_020 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23583 1.13762 4.1285 2.25388 1.6694 1.05986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25141 0.712798 1.00754 1.71493 2.52137

CAGE analysis