Hb_000724_040

Information

Type transcription factor
Description TF Family: MIKC
Location Contig724: 69811-80889
Sequence    

Annotation

kegg
ID vvi:100232936
description MADS-box protein CMB1
nr
ID XP_012067820.1
description PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
swissprot
ID Q39685
description MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
trembl
ID A0A067LB55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15741 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein cmb1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000724_040 0.0 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
2 Hb_005228_050 0.0072935122 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
3 Hb_002973_060 0.0254177843 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003786_030 0.0260692023 - - BnaUnng00830D [Brassica napus]
5 Hb_011108_010 0.0382665472 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
6 Hb_135887_010 0.0440688381 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_000115_030 0.0494489655 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
8 Hb_000540_080 0.054406674 - - PREDICTED: laccase-17 [Jatropha curcas]
9 Hb_104014_020 0.0605950654 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
10 Hb_000023_100 0.065722162 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
11 Hb_000077_040 0.066602243 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
12 Hb_099263_010 0.0683145915 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
13 Hb_005991_030 0.0685814358 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_096907_010 0.0737078252 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
15 Hb_045260_010 0.0742223616 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_003025_170 0.0779567813 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_000160_120 0.0785998912 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001437_170 0.0805791992 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
19 Hb_151290_010 0.0808246919 - - unnamed protein product [Vitis vinifera]
20 Hb_011362_010 0.0818265749 - - hypothetical protein JCGZ_14809 [Jatropha curcas]

Gene co-expression network

sample Hb_000724_040 Hb_000724_040 Hb_005228_050 Hb_005228_050 Hb_000724_040--Hb_005228_050 Hb_002973_060 Hb_002973_060 Hb_000724_040--Hb_002973_060 Hb_003786_030 Hb_003786_030 Hb_000724_040--Hb_003786_030 Hb_011108_010 Hb_011108_010 Hb_000724_040--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_000724_040--Hb_135887_010 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_005228_050--Hb_003786_030 Hb_005228_050--Hb_002973_060 Hb_005228_050--Hb_011108_010 Hb_005228_050--Hb_135887_010 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_002973_060--Hb_003786_030 Hb_002973_060--Hb_000115_030 Hb_104014_020 Hb_104014_020 Hb_002973_060--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_002973_060--Hb_000077_040 Hb_003786_030--Hb_135887_010 Hb_003786_030--Hb_011108_010 Hb_003786_030--Hb_104014_020 Hb_011108_010--Hb_135887_010 Hb_005991_030 Hb_005991_030 Hb_011108_010--Hb_005991_030 Hb_099263_010 Hb_099263_010 Hb_011108_010--Hb_099263_010 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_096907_010 Hb_096907_010 Hb_000115_030--Hb_096907_010 Hb_000115_030--Hb_000077_040 Hb_001437_170 Hb_001437_170 Hb_000115_030--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_000115_030--Hb_000160_120 Hb_000115_030--Hb_104014_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0549707 0.200277 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.390078

CAGE analysis