Hb_000724_060

Information

Type transcription factor
Description TF Family: MIKC
Location Contig724: 142377-147236
Sequence    

Annotation

kegg
ID tcc:TCM_011475
description K-box region and MADS-box transcription factor family protein
nr
ID XP_012067821.1
description PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
swissprot
ID D7KWY6
description Floral homeotic protein APETALA 1 OS=Arabidopsis lyrata subsp. lyrata GN=AP1 PE=3 SV=1
trembl
ID A0A067LA08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15742 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap1-like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55814: 142350-147455 , PASA_asmbl_55817: 143399-143498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000724_060 0.0 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
2 Hb_009079_020 0.0714135008 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
3 Hb_015175_070 0.0816415463 - - cysteine protease, putative [Ricinus communis]
4 Hb_004607_060 0.081882401 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
5 Hb_002092_060 0.0819183381 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005127_050 0.0836651103 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
7 Hb_007122_020 0.0920851549 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_003032_110 0.0937656353 - - -
9 Hb_002309_020 0.0990925071 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_001136_040 0.1011396405 - - amino acid transporter, putative [Ricinus communis]
11 Hb_006153_140 0.1032731273 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_002260_140 0.1041468116 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002686_220 0.1053708084 - - PREDICTED: expansin-A15-like [Jatropha curcas]
14 Hb_001818_010 0.108878235 - - Disease resistance response protein, putative [Ricinus communis]
15 Hb_150299_010 0.1092272527 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
16 Hb_000317_380 0.1107231161 - - Peroxidase 47 precursor, putative [Ricinus communis]
17 Hb_000866_130 0.111021353 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
18 Hb_028514_010 0.1142974856 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
19 Hb_001349_040 0.1143348833 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
20 Hb_001975_110 0.1144063077 - - -

Gene co-expression network

sample Hb_000724_060 Hb_000724_060 Hb_009079_020 Hb_009079_020 Hb_000724_060--Hb_009079_020 Hb_015175_070 Hb_015175_070 Hb_000724_060--Hb_015175_070 Hb_004607_060 Hb_004607_060 Hb_000724_060--Hb_004607_060 Hb_002092_060 Hb_002092_060 Hb_000724_060--Hb_002092_060 Hb_005127_050 Hb_005127_050 Hb_000724_060--Hb_005127_050 Hb_007122_020 Hb_007122_020 Hb_000724_060--Hb_007122_020 Hb_006153_140 Hb_006153_140 Hb_009079_020--Hb_006153_140 Hb_002260_140 Hb_002260_140 Hb_009079_020--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_009079_020--Hb_001818_010 Hb_112950_010 Hb_112950_010 Hb_009079_020--Hb_112950_010 Hb_002686_220 Hb_002686_220 Hb_009079_020--Hb_002686_220 Hb_015175_070--Hb_002092_060 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_000310_050 Hb_000310_050 Hb_015175_070--Hb_000310_050 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_001408_080 Hb_001408_080 Hb_004607_060--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_004607_060--Hb_012132_050 Hb_000964_040 Hb_000964_040 Hb_004607_060--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_004607_060--Hb_150299_010 Hb_004607_060--Hb_005127_050 Hb_002092_060--Hb_002309_020 Hb_002092_060--Hb_005295_030 Hb_000005_290 Hb_000005_290 Hb_002092_060--Hb_000005_290 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_005127_050--Hb_150299_010 Hb_005127_050--Hb_009079_020 Hb_005127_050--Hb_007122_020 Hb_003175_120 Hb_003175_120 Hb_005127_050--Hb_003175_120 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_007122_020--Hb_000964_040 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.12482 3.23977 12.3246 0.0625863 0.0591062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.88337

CAGE analysis