Hb_000729_050

Information

Type -
Description -
Location Contig729: 88883-90631
Sequence    

Annotation

kegg
ID rcu:RCOM_1382150
description Pinin, putative
nr
ID XP_002522077.1
description Pinin, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7W1
description Pinin, putative OS=Ricinus communis GN=RCOM_1382150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55886: 87389-90923
cDNA
(Sanger)
(ID:Location)		 024_J11.ab1: 87398-89234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000729_050 0.0 - - Pinin, putative [Ricinus communis]
2 Hb_000184_110 0.071336986 - - hypothetical protein F383_18769 [Gossypium arboreum]
3 Hb_007407_040 0.0824769004 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_011316_110 0.0888263483 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
5 Hb_004452_100 0.0914246105 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
6 Hb_003001_150 0.0973029525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_008143_030 0.0984820585 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
8 Hb_000317_440 0.0995090916 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
9 Hb_007447_010 0.1003280716 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
10 Hb_000179_020 0.1014421673 - - amidase, putative [Ricinus communis]
11 Hb_108216_040 0.1018489844 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
12 Hb_001366_040 0.1018501753 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
13 Hb_004195_280 0.1031993187 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
14 Hb_002174_060 0.1047826139 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
15 Hb_002043_170 0.1049155068 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_001437_100 0.104920652 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
17 Hb_000977_180 0.1053338538 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
18 Hb_000335_010 0.1055809154 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_002193_010 0.107239264 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
20 Hb_002798_040 0.1074336665 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000729_050 Hb_000729_050 Hb_000184_110 Hb_000184_110 Hb_000729_050--Hb_000184_110 Hb_007407_040 Hb_007407_040 Hb_000729_050--Hb_007407_040 Hb_011316_110 Hb_011316_110 Hb_000729_050--Hb_011316_110 Hb_004452_100 Hb_004452_100 Hb_000729_050--Hb_004452_100 Hb_003001_150 Hb_003001_150 Hb_000729_050--Hb_003001_150 Hb_008143_030 Hb_008143_030 Hb_000729_050--Hb_008143_030 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_000184_110--Hb_004452_100 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_000048_140 Hb_000048_140 Hb_007407_040--Hb_000048_140 Hb_001366_040 Hb_001366_040 Hb_007407_040--Hb_001366_040 Hb_004195_280 Hb_004195_280 Hb_007407_040--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_007407_040--Hb_000179_020 Hb_001504_160 Hb_001504_160 Hb_007407_040--Hb_001504_160 Hb_003362_040 Hb_003362_040 Hb_007407_040--Hb_003362_040 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_002400_270 Hb_002400_270 Hb_011316_110--Hb_002400_270 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_011316_110--Hb_000184_110 Hb_002798_040 Hb_002798_040 Hb_004452_100--Hb_002798_040 Hb_004452_100--Hb_001366_040 Hb_011318_010 Hb_011318_010 Hb_004452_100--Hb_011318_010 Hb_000244_250 Hb_000244_250 Hb_004452_100--Hb_000244_250 Hb_002039_010 Hb_002039_010 Hb_004452_100--Hb_002039_010 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.995 23.7529 16.8217 15.0575 116.191 107.716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.613 31.6851 58.9925 49.9589 45.3621

CAGE analysis