Hb_000729_060

Information

Type -
Description -
Location Contig729: 92710-94642
Sequence    

Annotation

kegg
ID rcu:RCOM_1382160
description hypothetical protein
nr
ID XP_002522078.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7W2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55887: 92716-94411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000729_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000402_200 0.1325064813 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
3 Hb_000085_310 0.1394331136 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
4 Hb_000339_070 0.141766843 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
5 Hb_048985_010 0.1425935129 - - -
6 Hb_008453_020 0.1447559489 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
7 Hb_000014_100 0.1455536623 - - -
8 Hb_007245_090 0.1484793945 - - -
9 Hb_001439_120 0.1495611716 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001220_040 0.150873962 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
11 Hb_021068_050 0.151712562 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
12 Hb_006824_020 0.1535886115 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
13 Hb_026988_020 0.1538900461 - - outward rectifying K+ channel [Hevea brasiliensis]
14 Hb_006452_060 0.1548509253 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_000614_070 0.1555557056 - - -
16 Hb_000291_210 0.1556804378 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
17 Hb_000809_040 0.1557239171 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
18 Hb_004108_050 0.1579625736 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
19 Hb_001767_100 0.1583806698 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
20 Hb_000008_250 0.1595562577 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000729_060 Hb_000729_060 Hb_000402_200 Hb_000402_200 Hb_000729_060--Hb_000402_200 Hb_000085_310 Hb_000085_310 Hb_000729_060--Hb_000085_310 Hb_000339_070 Hb_000339_070 Hb_000729_060--Hb_000339_070 Hb_048985_010 Hb_048985_010 Hb_000729_060--Hb_048985_010 Hb_008453_020 Hb_008453_020 Hb_000729_060--Hb_008453_020 Hb_000014_100 Hb_000014_100 Hb_000729_060--Hb_000014_100 Hb_021068_050 Hb_021068_050 Hb_000402_200--Hb_021068_050 Hb_001439_120 Hb_001439_120 Hb_000402_200--Hb_001439_120 Hb_001143_170 Hb_001143_170 Hb_000402_200--Hb_001143_170 Hb_010638_020 Hb_010638_020 Hb_000402_200--Hb_010638_020 Hb_018790_060 Hb_018790_060 Hb_000402_200--Hb_018790_060 Hb_022216_020 Hb_022216_020 Hb_000402_200--Hb_022216_020 Hb_001366_220 Hb_001366_220 Hb_000085_310--Hb_001366_220 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000085_310--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_007245_090 Hb_007245_090 Hb_000339_070--Hb_007245_090 Hb_005031_070 Hb_005031_070 Hb_000339_070--Hb_005031_070 Hb_002849_210 Hb_002849_210 Hb_000339_070--Hb_002849_210 Hb_005214_110 Hb_005214_110 Hb_000339_070--Hb_005214_110 Hb_004223_230 Hb_004223_230 Hb_000339_070--Hb_004223_230 Hb_000116_470 Hb_000116_470 Hb_000339_070--Hb_000116_470 Hb_000155_190 Hb_000155_190 Hb_048985_010--Hb_000155_190 Hb_000977_080 Hb_000977_080 Hb_048985_010--Hb_000977_080 Hb_000622_310 Hb_000622_310 Hb_048985_010--Hb_000622_310 Hb_000189_270 Hb_000189_270 Hb_048985_010--Hb_000189_270 Hb_004884_220 Hb_004884_220 Hb_048985_010--Hb_004884_220 Hb_048985_010--Hb_021068_050 Hb_000958_010 Hb_000958_010 Hb_008453_020--Hb_000958_010 Hb_001198_090 Hb_001198_090 Hb_008453_020--Hb_001198_090 Hb_005015_010 Hb_005015_010 Hb_008453_020--Hb_005015_010 Hb_030620_010 Hb_030620_010 Hb_008453_020--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_008453_020--Hb_000117_040 Hb_000733_060 Hb_000733_060 Hb_008453_020--Hb_000733_060 Hb_000014_100--Hb_007245_090 Hb_006499_010 Hb_006499_010 Hb_000014_100--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5059 7.38586 0.926569 7.84545 52.9275 14.3667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4414 40.9463 34.2984 9.05087 0.587902

CAGE analysis