Hb_000731_190

Information

Type -
Description -
Location Contig731: 181420-187886
Sequence    

Annotation

kegg
ID rcu:RCOM_0905270
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative
nr
ID XP_012091377.1
description PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
swissprot
ID Q93YW7
description Cardiolipin synthase (CMP-forming), mitochondrial OS=Arabidopsis thaliana GN=CLS PE=1 SV=1
trembl
ID A0A067JAE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21242 PE=3 SV=1
Gene Ontology
ID GO:0005739
description cardiolipin mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55979: 181495-187864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_190 0.0 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
2 Hb_006478_160 0.0541542228 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
3 Hb_000417_360 0.0693949362 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
4 Hb_000571_020 0.072901728 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
5 Hb_091433_020 0.0740806852 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
6 Hb_001979_040 0.0799471961 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
7 Hb_000035_370 0.0823282776 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000302_140 0.0840401731 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
9 Hb_001484_070 0.084901194 - - conserved hypothetical protein [Ricinus communis]
10 Hb_026053_020 0.085833446 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
11 Hb_024074_010 0.085929777 - - PREDICTED: cytochrome c [Jatropha curcas]
12 Hb_000261_140 0.0860674755 - - -
13 Hb_010175_040 0.0868323854 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
14 Hb_001141_140 0.0871748908 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
15 Hb_000567_410 0.0872446521 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
16 Hb_000735_040 0.0872625115 - - 60S ribosomal protein L32A [Hevea brasiliensis]
17 Hb_000920_110 0.0896814519 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_000258_250 0.0921448171 - - Origin recognition complex subunit, putative [Ricinus communis]
19 Hb_001085_120 0.0925664197 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
20 Hb_006478_150 0.0930159249 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]

Gene co-expression network

sample Hb_000731_190 Hb_000731_190 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000417_360--Hb_091433_020 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_000302_140 Hb_000302_140 Hb_000571_020--Hb_000302_140 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000538_120 Hb_000538_120 Hb_000571_020--Hb_000538_120 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_001484_070 Hb_001484_070 Hb_001979_040--Hb_001484_070 Hb_005511_160 Hb_005511_160 Hb_001979_040--Hb_005511_160 Hb_001979_040--Hb_000920_110 Hb_001780_040 Hb_001780_040 Hb_001979_040--Hb_001780_040 Hb_002235_350 Hb_002235_350 Hb_001979_040--Hb_002235_350 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000035_370--Hb_000920_110 Hb_002768_030 Hb_002768_030 Hb_000035_370--Hb_002768_030 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_006831_130 Hb_006831_130 Hb_000035_370--Hb_006831_130 Hb_026053_020 Hb_026053_020 Hb_000035_370--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73185 7.91272 15.2796 10.3852 7.87469 7.4274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4367 41.2181 19.4078 13.0778 7.81756

CAGE analysis