Hb_000731_220

Information

Type -
Description -
Location Contig731: 198508-202956
Sequence    

Annotation

kegg
ID rcu:RCOM_0905230
description Derlin-2, putative
nr
ID XP_012091374.1
description PREDICTED: derlin-2.2 [Jatropha curcas]
swissprot
ID Q9ZS88
description Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1
trembl
ID A0A067JDF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55988: 198453-203001 , PASA_asmbl_55989: 201094-202998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_220 0.0 - - PREDICTED: derlin-2.2 [Jatropha curcas]
2 Hb_007062_040 0.0617165241 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
3 Hb_106552_020 0.0738991678 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
4 Hb_001922_150 0.0772497704 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
5 Hb_183433_010 0.0777485933 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
6 Hb_000416_110 0.0779450724 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
7 Hb_000087_060 0.0783610941 - - protein transporter, putative [Ricinus communis]
8 Hb_000331_090 0.0795130509 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
9 Hb_002986_100 0.0811240631 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
10 Hb_004586_060 0.0815021511 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
11 Hb_001959_110 0.0818239817 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
12 Hb_007248_030 0.0834917924 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
13 Hb_007441_020 0.0846937656 - - Rab6 [Hevea brasiliensis]
14 Hb_032990_010 0.084972735 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
15 Hb_004096_180 0.0852663074 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
16 Hb_004020_040 0.0856371757 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
17 Hb_171900_090 0.0859664637 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003912_040 0.0870218596 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
19 Hb_005460_050 0.0870751473 - - COR413-PM2, putative [Ricinus communis]
20 Hb_001225_040 0.0871359783 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000731_220 Hb_000731_220 Hb_007062_040 Hb_007062_040 Hb_000731_220--Hb_007062_040 Hb_106552_020 Hb_106552_020 Hb_000731_220--Hb_106552_020 Hb_001922_150 Hb_001922_150 Hb_000731_220--Hb_001922_150 Hb_183433_010 Hb_183433_010 Hb_000731_220--Hb_183433_010 Hb_000416_110 Hb_000416_110 Hb_000731_220--Hb_000416_110 Hb_000087_060 Hb_000087_060 Hb_000731_220--Hb_000087_060 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_000046_570 Hb_000046_570 Hb_007062_040--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_007441_020 Hb_007441_020 Hb_106552_020--Hb_007441_020 Hb_000163_220 Hb_000163_220 Hb_106552_020--Hb_000163_220 Hb_000005_220 Hb_000005_220 Hb_106552_020--Hb_000005_220 Hb_005779_010 Hb_005779_010 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000976_140 Hb_000976_140 Hb_001922_150--Hb_000976_140 Hb_019280_030 Hb_019280_030 Hb_001922_150--Hb_019280_030 Hb_000313_220 Hb_000313_220 Hb_001922_150--Hb_000313_220 Hb_005730_040 Hb_005730_040 Hb_001922_150--Hb_005730_040 Hb_004020_040 Hb_004020_040 Hb_001922_150--Hb_004020_040 Hb_007416_340 Hb_007416_340 Hb_001922_150--Hb_007416_340 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230 Hb_002445_100 Hb_002445_100 Hb_000416_110--Hb_002445_100 Hb_000416_110--Hb_183433_010 Hb_001153_210 Hb_001153_210 Hb_000416_110--Hb_001153_210 Hb_000416_110--Hb_000005_220 Hb_000789_320 Hb_000789_320 Hb_000416_110--Hb_000789_320 Hb_000866_310 Hb_000866_310 Hb_000416_110--Hb_000866_310 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5909 20.3496 21.5092 20.2165 11.1895 19.8732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1081 18.2961 6.94821 14.9763 11.9203

CAGE analysis