Hb_000731_230

Information

Type -
Description -
Location Contig731: 208305-218034
Sequence    

Annotation

kegg
ID rcu:RCOM_0905210
description hypothetical protein
nr
ID XP_012091372.1
description PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
swissprot
ID P62286
description Abnormal spindle-like microcephaly-associated protein homolog OS=Canis familiaris GN=ASPM PE=2 SV=2
trembl
ID B9RXN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905210 PE=4 SV=1
Gene Ontology
ID GO:0000226
description abnormal spindle-like microcephaly-associated protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55990: 208452-208738 , PASA_asmbl_55991: 208836-209610 , PASA_asmbl_55992: 210605-212700 , PASA_asmbl_55993: 213453-213649 , PASA_asmbl_55994: 213657-215206 , PASA_asmbl_55995: 215561-217788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_230 0.0 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
2 Hb_003902_060 0.1955745294 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
3 Hb_078568_010 0.1995851324 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
4 Hb_075230_010 0.203762045 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
5 Hb_001196_040 0.2061123476 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
6 Hb_149714_010 0.2096905602 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
7 Hb_100105_010 0.2183885417 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
8 Hb_001799_110 0.222544443 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000302_130 0.2257704202 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
10 Hb_001545_050 0.2355728288 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
11 Hb_009393_180 0.2446280224 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
12 Hb_000568_060 0.2449914674 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
13 Hb_000926_230 0.2450233925 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000094_340 0.246019517 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
15 Hb_005000_250 0.2468969988 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
16 Hb_000264_290 0.2471427434 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
17 Hb_006907_100 0.2477542014 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
18 Hb_158144_010 0.2479648035 - - -
19 Hb_000959_310 0.2497091945 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
20 Hb_089140_120 0.2519998793 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000731_230 Hb_000731_230 Hb_003902_060 Hb_003902_060 Hb_000731_230--Hb_003902_060 Hb_078568_010 Hb_078568_010 Hb_000731_230--Hb_078568_010 Hb_075230_010 Hb_075230_010 Hb_000731_230--Hb_075230_010 Hb_001196_040 Hb_001196_040 Hb_000731_230--Hb_001196_040 Hb_149714_010 Hb_149714_010 Hb_000731_230--Hb_149714_010 Hb_100105_010 Hb_100105_010 Hb_000731_230--Hb_100105_010 Hb_003902_060--Hb_078568_010 Hb_003902_060--Hb_100105_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280 Hb_170532_010 Hb_170532_010 Hb_078568_010--Hb_170532_010 Hb_078568_010--Hb_000099_090 Hb_078568_010--Hb_075230_010 Hb_016006_010 Hb_016006_010 Hb_078568_010--Hb_016006_010 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_001277_190 Hb_001277_190 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_000345_260 Hb_000345_260 Hb_001196_040--Hb_000345_260 Hb_000086_320 Hb_000086_320 Hb_001196_040--Hb_000086_320 Hb_000094_340 Hb_000094_340 Hb_001196_040--Hb_000094_340 Hb_000186_300 Hb_000186_300 Hb_001196_040--Hb_000186_300 Hb_000568_060 Hb_000568_060 Hb_001196_040--Hb_000568_060 Hb_000086_340 Hb_000086_340 Hb_149714_010--Hb_000086_340 Hb_000475_040 Hb_000475_040 Hb_149714_010--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_149714_010--Hb_000122_050 Hb_000302_260 Hb_000302_260 Hb_149714_010--Hb_000302_260 Hb_030116_010 Hb_030116_010 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290 Hb_000302_130 Hb_000302_130 Hb_100105_010--Hb_000302_130 Hb_008667_040 Hb_008667_040 Hb_100105_010--Hb_008667_040 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31955 4.55983 6.9095 3.8558 0.046904 4.03869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27211 3.66358 0.0312202 0.488951 0.261275

CAGE analysis