Hb_000731_250

Information

Type -
Description -
Location Contig731: 221005-221784
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55996: 221339-223915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_250 0.0 - - -
2 Hb_007576_030 0.1938285849 - - -
3 Hb_000906_130 0.2036915338 - - -
4 Hb_000316_020 0.2136042442 - - protein binding protein, putative [Ricinus communis]
5 Hb_007017_020 0.2215882386 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
6 Hb_005224_030 0.2367498353 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
7 Hb_003124_060 0.247459236 - - Beta-ureidopropionase, putative [Ricinus communis]
8 Hb_000454_070 0.2478110863 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
9 Hb_003159_090 0.2479575032 - - -
10 Hb_001114_050 0.2508226903 - - hypothetical protein RCOM_0744580 [Ricinus communis]
11 Hb_001153_020 0.2530723432 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
12 Hb_000988_040 0.2542732872 - - -
13 Hb_009838_010 0.260183724 - - -
14 Hb_000084_320 0.2618558809 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
15 Hb_000771_130 0.2669734954 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_000380_020 0.2674890491 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
17 Hb_012291_030 0.2680718283 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
18 Hb_065378_010 0.2685033226 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_003209_200 0.2736360513 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
20 Hb_000723_190 0.2741213894 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000731_250 Hb_000731_250 Hb_007576_030 Hb_007576_030 Hb_000731_250--Hb_007576_030 Hb_000906_130 Hb_000906_130 Hb_000731_250--Hb_000906_130 Hb_000316_020 Hb_000316_020 Hb_000731_250--Hb_000316_020 Hb_007017_020 Hb_007017_020 Hb_000731_250--Hb_007017_020 Hb_005224_030 Hb_005224_030 Hb_000731_250--Hb_005224_030 Hb_003124_060 Hb_003124_060 Hb_000731_250--Hb_003124_060 Hb_004942_010 Hb_004942_010 Hb_007576_030--Hb_004942_010 Hb_000988_040 Hb_000988_040 Hb_007576_030--Hb_000988_040 Hb_004195_100 Hb_004195_100 Hb_007576_030--Hb_004195_100 Hb_005211_070 Hb_005211_070 Hb_007576_030--Hb_005211_070 Hb_007576_030--Hb_003124_060 Hb_000906_130--Hb_003124_060 Hb_000084_320 Hb_000084_320 Hb_000906_130--Hb_000084_320 Hb_088538_010 Hb_088538_010 Hb_000906_130--Hb_088538_010 Hb_000906_130--Hb_005224_030 Hb_004734_050 Hb_004734_050 Hb_000906_130--Hb_004734_050 Hb_000161_150 Hb_000161_150 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_003754_080 Hb_003754_080 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_007017_020--Hb_000316_020 Hb_000032_480 Hb_000032_480 Hb_007017_020--Hb_000032_480 Hb_001780_140 Hb_001780_140 Hb_007017_020--Hb_001780_140 Hb_002522_020 Hb_002522_020 Hb_007017_020--Hb_002522_020 Hb_001842_130 Hb_001842_130 Hb_007017_020--Hb_001842_130 Hb_003086_060 Hb_003086_060 Hb_005224_030--Hb_003086_060 Hb_002759_240 Hb_002759_240 Hb_005224_030--Hb_002759_240 Hb_001159_200 Hb_001159_200 Hb_005224_030--Hb_001159_200 Hb_029510_040 Hb_029510_040 Hb_005224_030--Hb_029510_040 Hb_000723_190 Hb_000723_190 Hb_005224_030--Hb_000723_190 Hb_001863_420 Hb_001863_420 Hb_005224_030--Hb_001863_420 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_006342_020 Hb_006342_020 Hb_003124_060--Hb_006342_020 Hb_003124_060--Hb_004734_050 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122286 0.135157 0 0 1.1928 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04244 2.29419 3.08712 1.55365 0.748699

CAGE analysis