Hb_000731_260

Information

Type -
Description -
Location Contig731: 221834-223732
Sequence    

Annotation

kegg
ID rcu:RCOM_0905090
description hypothetical protein
nr
ID XP_002518500.1
description hypothetical protein RCOM_0905090 [Ricinus communis]
swissprot
ID Q8C0R7
description Zinc finger MYND domain-containing protein 15 OS=Mus musculus GN=Zmynd15 PE=1 SV=1
trembl
ID B9RXN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905090 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger mynd domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55996: 221339-223915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_260 0.0 - - hypothetical protein RCOM_0905090 [Ricinus communis]
2 Hb_004705_120 0.1003216328 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004679_050 0.1059190601 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
4 Hb_000108_070 0.1094491945 - - alpha-tubulin 1 [Hevea brasiliensis]
5 Hb_001080_280 0.1125835827 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
6 Hb_000521_130 0.114913532 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
7 Hb_148113_010 0.1159340044 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
8 Hb_015778_010 0.119670088 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
9 Hb_000922_390 0.1208091394 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
10 Hb_002027_040 0.1213907309 - - synapse-associated protein, putative [Ricinus communis]
11 Hb_003462_120 0.1225770791 - - Acidic endochitinase [Theobroma cacao]
12 Hb_000592_020 0.1237101507 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_009193_030 0.1248869355 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
14 Hb_056753_010 0.1256692601 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_001507_040 0.1266198364 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005098_030 0.1290328757 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
17 Hb_001504_330 0.1322287886 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
18 Hb_000340_320 0.1325204046 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
19 Hb_000928_110 0.1325833568 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
20 Hb_008616_070 0.1326518142 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000731_260 Hb_000731_260 Hb_004705_120 Hb_004705_120 Hb_000731_260--Hb_004705_120 Hb_004679_050 Hb_004679_050 Hb_000731_260--Hb_004679_050 Hb_000108_070 Hb_000108_070 Hb_000731_260--Hb_000108_070 Hb_001080_280 Hb_001080_280 Hb_000731_260--Hb_001080_280 Hb_000521_130 Hb_000521_130 Hb_000731_260--Hb_000521_130 Hb_148113_010 Hb_148113_010 Hb_000731_260--Hb_148113_010 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_004705_120--Hb_001080_280 Hb_056753_010 Hb_056753_010 Hb_004679_050--Hb_056753_010 Hb_005098_030 Hb_005098_030 Hb_004679_050--Hb_005098_030 Hb_004679_050--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_004679_050--Hb_011671_450 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000521_130--Hb_017131_010 Hb_000173_410 Hb_000173_410 Hb_000521_130--Hb_000173_410 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000023_090 Hb_000023_090 Hb_148113_010--Hb_000023_090 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_028515_010 Hb_028515_010 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.81437 4.30048 2.16695 9.05724 1.93277 3.61154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1608 7.0917 17.1688 8.19145 4.12793

CAGE analysis