Hb_000731_270

Information

Type -
Description -
Location Contig731: 224382-228834
Sequence    

Annotation

kegg
ID rcu:RCOM_0905080
description nuclear acid binding protein, putative
nr
ID XP_012091367.1
description PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
swissprot
ID Q9SAB3
description Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1
trembl
ID A0A067JAI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21233 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55997: 224389-228824 , PASA_asmbl_55998: 226024-226847 , PASA_asmbl_55999: 227018-227336
cDNA
(Sanger)
(ID:Location)		 008_E16.ab1: 224436-225747

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_270 0.0 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
2 Hb_000347_070 0.0498114494 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007645_100 0.0611068077 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
4 Hb_000207_180 0.062418548 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
5 Hb_006420_040 0.0642871564 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
6 Hb_004254_090 0.0643578958 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
7 Hb_000441_120 0.0689076988 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000494_070 0.0705693228 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
9 Hb_000473_110 0.0724296413 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
10 Hb_009270_020 0.0728485067 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
11 Hb_000006_040 0.0758137595 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_004619_030 0.0771046026 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
13 Hb_005730_090 0.0776740158 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
14 Hb_002263_020 0.0784754325 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_001550_060 0.0793630821 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_002025_020 0.0795065081 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
17 Hb_001221_080 0.0799846749 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_000617_180 0.0803261819 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
19 Hb_002518_260 0.0812685348 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
20 Hb_000028_480 0.0814341194 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000731_270 Hb_000731_270 Hb_000347_070 Hb_000347_070 Hb_000731_270--Hb_000347_070 Hb_007645_100 Hb_007645_100 Hb_000731_270--Hb_007645_100 Hb_000207_180 Hb_000207_180 Hb_000731_270--Hb_000207_180 Hb_006420_040 Hb_006420_040 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000441_120 Hb_000441_120 Hb_000731_270--Hb_000441_120 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_002217_250 Hb_002217_250 Hb_007645_100--Hb_002217_250 Hb_002263_020 Hb_002263_020 Hb_007645_100--Hb_002263_020 Hb_003847_130 Hb_003847_130 Hb_007645_100--Hb_003847_130 Hb_005054_090 Hb_005054_090 Hb_007645_100--Hb_005054_090 Hb_007645_100--Hb_000347_070 Hb_009270_020 Hb_009270_020 Hb_000207_180--Hb_009270_020 Hb_000207_180--Hb_000441_120 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000207_180--Hb_000347_070 Hb_000207_180--Hb_006420_040 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_000441_120--Hb_003206_130 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_000441_120--Hb_009270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8289 29.6093 26.1758 20.9357 46.2694 29.9409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9118 25.1605 35.4289 39.8568 36.7758

CAGE analysis