Hb_000731_290

Information

Type -
Description -
Location Contig731: 237536-241330
Sequence    

Annotation

kegg
ID rcu:RCOM_0905060
description Protein sufB, putative
nr
ID AIU41658.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZS97
description UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1
trembl
ID A0A097P9T6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI8 PE=2 SV=1
Gene Ontology
ID GO:0005524
description upf0051 protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56002: 240028-240448 , PASA_asmbl_56003: 237393-241190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_290 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_052946_010 0.0620900566 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
3 Hb_001080_030 0.0872405392 - - AMP dependent ligase, putative [Ricinus communis]
4 Hb_000025_500 0.0975392609 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_001341_010 0.1037646003 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
6 Hb_000167_120 0.1067935765 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
7 Hb_003549_050 0.1102501797 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
8 Hb_001408_120 0.1118274203 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_005695_080 0.1163365745 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
10 Hb_013399_090 0.1173283428 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
11 Hb_000221_180 0.1222209472 - - VQ motif-containing family protein [Populus trichocarpa]
12 Hb_000066_040 0.122551244 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_001425_010 0.1227776023 - - sugar transporter, putative [Ricinus communis]
14 Hb_000997_290 0.1227802196 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
15 Hb_001405_080 0.1230538809 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
16 Hb_008511_140 0.1247258888 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
17 Hb_003029_140 0.1251389845 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
18 Hb_001195_370 0.1257636692 - - -
19 Hb_003490_050 0.1271985927 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
20 Hb_004041_030 0.1272559005 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000731_290 Hb_000731_290 Hb_052946_010 Hb_052946_010 Hb_000731_290--Hb_052946_010 Hb_001080_030 Hb_001080_030 Hb_000731_290--Hb_001080_030 Hb_000025_500 Hb_000025_500 Hb_000731_290--Hb_000025_500 Hb_001341_010 Hb_001341_010 Hb_000731_290--Hb_001341_010 Hb_000167_120 Hb_000167_120 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050 Hb_052946_010--Hb_001080_030 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_000025_500--Hb_001341_010 Hb_000025_500--Hb_004041_030 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_001341_010--Hb_000167_120 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_000167_120--Hb_005181_050 Hb_000844_050 Hb_000844_050 Hb_000167_120--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_001998_150 Hb_003680_020 Hb_003680_020 Hb_000167_120--Hb_003680_020 Hb_001405_080 Hb_001405_080 Hb_003549_050--Hb_001405_080 Hb_001425_010 Hb_001425_010 Hb_003549_050--Hb_001425_010 Hb_000922_260 Hb_000922_260 Hb_003549_050--Hb_000922_260 Hb_003549_050--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_003549_050--Hb_004111_030 Hb_006816_010 Hb_006816_010 Hb_003549_050--Hb_006816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48081 21.3012 12.8018 18.6319 5.16443 6.32133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88832 3.98872 5.53747 24.9587 53.2457

CAGE analysis