Hb_000732_140

Information

Type -
Description -
Location Contig732: 144258-148530
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03280g
description POPTRDRAFT_817748; ABC1 family protein
nr
ID XP_012091475.1
description PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
swissprot
ID Q55G83
description Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1
trembl
ID A0A067JAM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21342 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable serine threonine-protein kinase abkc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56124: 144188-145566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_140 0.0 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
2 Hb_077562_050 0.0838617482 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
3 Hb_000567_210 0.0900077041 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
4 Hb_002301_220 0.0920231761 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
5 Hb_000453_170 0.0934855485 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005188_050 0.0963512028 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000085_100 0.0971852945 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
8 Hb_001245_070 0.097971608 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
9 Hb_015807_070 0.1000547712 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
10 Hb_001021_170 0.1001559632 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
11 Hb_001595_030 0.1002593421 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_001621_150 0.1009559965 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
13 Hb_000336_250 0.1016027934 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
14 Hb_000010_400 0.1028203489 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
15 Hb_126643_020 0.1028644785 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
16 Hb_000002_040 0.1030242812 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_005505_050 0.1035710609 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
18 Hb_002685_010 0.1041064001 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
19 Hb_045793_010 0.1046586332 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
20 Hb_175338_030 0.1046634837 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]

Gene co-expression network

sample Hb_000732_140 Hb_000732_140 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_000567_210 Hb_000567_210 Hb_000732_140--Hb_000567_210 Hb_002301_220 Hb_002301_220 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_000289_060 Hb_000289_060 Hb_077562_050--Hb_000289_060 Hb_000538_270 Hb_000538_270 Hb_077562_050--Hb_000538_270 Hb_000010_400 Hb_000010_400 Hb_077562_050--Hb_000010_400 Hb_077562_050--Hb_000453_170 Hb_027295_050 Hb_027295_050 Hb_077562_050--Hb_027295_050 Hb_004155_010 Hb_004155_010 Hb_077562_050--Hb_004155_010 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000453_170--Hb_000289_060 Hb_005188_050--Hb_000827_070 Hb_000487_290 Hb_000487_290 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_000085_100--Hb_000859_060 Hb_001178_140 Hb_001178_140 Hb_000085_100--Hb_001178_140 Hb_000000_370 Hb_000000_370 Hb_000085_100--Hb_000000_370 Hb_004204_170 Hb_004204_170 Hb_000085_100--Hb_004204_170 Hb_126643_020 Hb_126643_020 Hb_000085_100--Hb_126643_020 Hb_000629_010 Hb_000629_010 Hb_000085_100--Hb_000629_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6159 8.40037 4.58102 2.08884 8.43232 6.483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07031 5.53512 8.84393 4.90959 3.85983

CAGE analysis