Hb_000732_190

Information

Type -
Description -
Location Contig732: 194593-198814
Sequence    

Annotation

kegg
ID rcu:RCOM_1096250
description structural molecule, putative
nr
ID XP_002524692.1
description structural molecule, putative [Ricinus communis]
swissprot
ID Q8VYN2
description Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1
trembl
ID B9SFC3
description Structural molecule, putative OS=Ricinus communis GN=RCOM_1096250 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 4-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56127: 194695-198785
cDNA
(Sanger)
(ID:Location)		 035_N04.ab1: 194695-198258 , 041_I11.ab1: 194695-198231

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_190 0.0 - - structural molecule, putative [Ricinus communis]
2 Hb_001140_360 0.1191413108 - - -
3 Hb_001728_020 0.128603719 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
4 Hb_000979_110 0.1297828397 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
5 Hb_000331_510 0.1352456055 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
6 Hb_000926_260 0.1369539606 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000012_240 0.1436651219 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
8 Hb_002232_430 0.14741018 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
9 Hb_026198_010 0.1474925643 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
10 Hb_003417_030 0.1503354726 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
11 Hb_128589_010 0.1504069557 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
12 Hb_000529_280 0.1510438854 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_000345_320 0.151442979 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
14 Hb_008053_060 0.1515390843 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
15 Hb_009646_010 0.1520405249 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
16 Hb_003428_090 0.1521113507 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
17 Hb_003040_040 0.1536501787 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
18 Hb_177994_010 0.1541998283 - - PREDICTED: cullin-1 [Jatropha curcas]
19 Hb_001004_140 0.1554434549 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
20 Hb_006637_030 0.1556282715 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]

Gene co-expression network

sample Hb_000732_190 Hb_000732_190 Hb_001140_360 Hb_001140_360 Hb_000732_190--Hb_001140_360 Hb_001728_020 Hb_001728_020 Hb_000732_190--Hb_001728_020 Hb_000979_110 Hb_000979_110 Hb_000732_190--Hb_000979_110 Hb_000331_510 Hb_000331_510 Hb_000732_190--Hb_000331_510 Hb_000926_260 Hb_000926_260 Hb_000732_190--Hb_000926_260 Hb_000012_240 Hb_000012_240 Hb_000732_190--Hb_000012_240 Hb_001004_140 Hb_001004_140 Hb_001140_360--Hb_001004_140 Hb_000144_120 Hb_000144_120 Hb_001140_360--Hb_000144_120 Hb_012760_040 Hb_012760_040 Hb_001140_360--Hb_012760_040 Hb_082741_010 Hb_082741_010 Hb_001140_360--Hb_082741_010 Hb_008053_060 Hb_008053_060 Hb_001140_360--Hb_008053_060 Hb_000529_280 Hb_000529_280 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_172632_050 Hb_172632_050 Hb_001728_020--Hb_172632_050 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_028707_070 Hb_028707_070 Hb_000979_110--Hb_028707_070 Hb_000000_230 Hb_000000_230 Hb_000979_110--Hb_000000_230 Hb_003040_040 Hb_003040_040 Hb_000979_110--Hb_003040_040 Hb_000979_110--Hb_001728_020 Hb_000979_110--Hb_000529_280 Hb_006816_480 Hb_006816_480 Hb_000331_510--Hb_006816_480 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330 Hb_000926_260--Hb_026198_010 Hb_001328_080 Hb_001328_080 Hb_000926_260--Hb_001328_080 Hb_060094_010 Hb_060094_010 Hb_000926_260--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000926_260--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_000926_260--Hb_003636_080 Hb_089140_040 Hb_089140_040 Hb_000926_260--Hb_089140_040 Hb_000711_010 Hb_000711_010 Hb_000012_240--Hb_000711_010 Hb_000012_240--Hb_000666_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72223 40.5251 37.1285 36.1899 5.87816 6.59881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1542 26.2827 10.2685 45.4566 17.0324

CAGE analysis