Hb_000732_220

Information

Type -
Description -
Location Contig732: 224031-225773
Sequence    

Annotation

kegg
ID rcu:RCOM_1096010
description ubiquitin-protein ligase, putative
nr
ID XP_012091483.1
description PREDICTED: importin subunit alpha-5 [Jatropha curcas]
swissprot
ID Q5EFZ4
description Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3
trembl
ID A0A067JDP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21349 PE=4 SV=1
Gene Ontology
ID GO:0016874
description vacuolar protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56130: 223885-225902
cDNA
(Sanger)
(ID:Location)		 035_N06.ab1: 225155-225865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_220 0.0 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
2 Hb_001104_020 0.0381085773 - - DNA binding protein, putative [Ricinus communis]
3 Hb_019570_010 0.0762948136 - - lyase, putative [Ricinus communis]
4 Hb_000152_120 0.089996802 - - alpha-l-fucosidase, putative [Ricinus communis]
5 Hb_000359_180 0.0908304179 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002805_180 0.0935815423 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004592_010 0.0996674127 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
8 Hb_000941_010 0.1005762953 - - hypothetical protein RCOM_0504460 [Ricinus communis]
9 Hb_000951_090 0.1010258603 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_000008_150 0.1076485248 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_003506_010 0.1081322774 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
12 Hb_005892_040 0.1088723029 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
13 Hb_002918_120 0.1106665047 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_093218_010 0.1111218054 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
15 Hb_001135_010 0.111846568 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_002045_010 0.1125623587 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
17 Hb_004162_320 0.1127395145 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
18 Hb_004832_010 0.1131905061 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005144_060 0.11531604 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
20 Hb_001437_260 0.1182429943 - - PREDICTED: protein FAM98B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000732_220 Hb_000732_220 Hb_001104_020 Hb_001104_020 Hb_000732_220--Hb_001104_020 Hb_019570_010 Hb_019570_010 Hb_000732_220--Hb_019570_010 Hb_000152_120 Hb_000152_120 Hb_000732_220--Hb_000152_120 Hb_000359_180 Hb_000359_180 Hb_000732_220--Hb_000359_180 Hb_002805_180 Hb_002805_180 Hb_000732_220--Hb_002805_180 Hb_004592_010 Hb_004592_010 Hb_000732_220--Hb_004592_010 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_001104_020--Hb_000152_120 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_000951_090 Hb_000951_090 Hb_001104_020--Hb_000951_090 Hb_001104_020--Hb_019570_010 Hb_019570_010--Hb_004592_010 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_001244_070 Hb_001244_070 Hb_000152_120--Hb_001244_070 Hb_000152_120--Hb_000951_090 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_000359_180--Hb_002805_180 Hb_001310_060 Hb_001310_060 Hb_000359_180--Hb_001310_060 Hb_000077_300 Hb_000077_300 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010 Hb_000359_180--Hb_004592_010 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_002805_180--Hb_005144_060 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025932 1.37443 12.442 8.78238 0.0657499 0.0923913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.55257 6.36151

CAGE analysis