Hb_000732_250

Information

Type -
Description -
Location Contig732: 248914-254326
Sequence    

Annotation

kegg
ID rcu:RCOM_1095880
description NADH dehydrogenase, putative (EC:1.6.5.3)
nr
ID XP_011001139.1
description PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
swissprot
ID Q94BV7
description External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1
trembl
ID B9SFB6
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1095880 PE=4 SV=1
Gene Ontology
ID GO:0005509
description external alternative nad h-ubiquinone oxidoreductase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56135: 248918-250000 , PASA_asmbl_56136: 250810-251642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_250 0.0 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
2 Hb_000987_060 0.1127384473 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
3 Hb_000345_200 0.1359484296 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
4 Hb_034688_020 0.1394376421 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
5 Hb_001189_140 0.1424091292 - - -
6 Hb_001825_060 0.147889485 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
7 Hb_001856_200 0.1484893642 - - Esterase PIR7B, putative [Ricinus communis]
8 Hb_004724_210 0.1550219871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001159_110 0.1565765576 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
10 Hb_000649_240 0.1608658261 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
11 Hb_002097_200 0.1615665962 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_005074_030 0.163204078 - - -
13 Hb_000975_360 0.1668685767 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002042_130 0.1671925693 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
15 Hb_006909_060 0.1687618365 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
16 Hb_001564_080 0.1690646406 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
17 Hb_000538_230 0.1693213709 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
18 Hb_000230_390 0.171610663 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
19 Hb_005551_050 0.1721955282 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
20 Hb_189208_020 0.1723022779 - - LRX2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000732_250 Hb_000732_250 Hb_000987_060 Hb_000987_060 Hb_000732_250--Hb_000987_060 Hb_000345_200 Hb_000345_200 Hb_000732_250--Hb_000345_200 Hb_034688_020 Hb_034688_020 Hb_000732_250--Hb_034688_020 Hb_001189_140 Hb_001189_140 Hb_000732_250--Hb_001189_140 Hb_001825_060 Hb_001825_060 Hb_000732_250--Hb_001825_060 Hb_001856_200 Hb_001856_200 Hb_000732_250--Hb_001856_200 Hb_000987_060--Hb_001856_200 Hb_006788_140 Hb_006788_140 Hb_000987_060--Hb_006788_140 Hb_007943_050 Hb_007943_050 Hb_000987_060--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000987_060--Hb_006909_060 Hb_002097_200 Hb_002097_200 Hb_000987_060--Hb_002097_200 Hb_126380_010 Hb_126380_010 Hb_000345_200--Hb_126380_010 Hb_001205_030 Hb_001205_030 Hb_000345_200--Hb_001205_030 Hb_189208_020 Hb_189208_020 Hb_000345_200--Hb_189208_020 Hb_001894_050 Hb_001894_050 Hb_000345_200--Hb_001894_050 Hb_001794_060 Hb_001794_060 Hb_000345_200--Hb_001794_060 Hb_001146_010 Hb_001146_010 Hb_034688_020--Hb_001146_010 Hb_000749_050 Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_000538_230 Hb_000538_230 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470 Hb_000363_210 Hb_000363_210 Hb_001189_140--Hb_000363_210 Hb_001892_020 Hb_001892_020 Hb_001189_140--Hb_001892_020 Hb_003376_350 Hb_003376_350 Hb_001189_140--Hb_003376_350 Hb_165026_020 Hb_165026_020 Hb_001189_140--Hb_165026_020 Hb_010883_090 Hb_010883_090 Hb_001189_140--Hb_010883_090 Hb_000230_390 Hb_000230_390 Hb_001189_140--Hb_000230_390 Hb_001825_060--Hb_001856_200 Hb_002217_020 Hb_002217_020 Hb_001825_060--Hb_002217_020 Hb_012573_040 Hb_012573_040 Hb_001825_060--Hb_012573_040 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230 Hb_001856_200--Hb_002217_020 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49293 16.3036 2.50357 5.79026 2.73677 2.85052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.56936 8.64273 10.7604 3.57932 2.04525

CAGE analysis