Hb_000732_260

Information

Type -
Description -
Location Contig732: 261469-265861
Sequence    

Annotation

kegg
ID rcu:RCOM_0611550
description WD-repeat protein, putative
nr
ID XP_012091493.1
description PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
swissprot
ID Q60525
description Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1
trembl
ID A0A067JLJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21356 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56137: 261911-262954 , PASA_asmbl_56138: 262968-265002 , PASA_asmbl_56139: 265016-265865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_260 0.0 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
2 Hb_033491_010 0.0597815571 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
3 Hb_000282_060 0.0624750963 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
4 Hb_002249_140 0.0698416228 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
5 Hb_000272_100 0.0735005589 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_001269_150 0.082144397 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
7 Hb_001811_150 0.0831820595 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
8 Hb_004223_130 0.0838887875 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006824_020 0.0857900942 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
10 Hb_003728_020 0.0873160214 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000771_110 0.0887350113 - - protein phosphatase 2C [Hevea brasiliensis]
12 Hb_150069_020 0.0890904429 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
13 Hb_000784_090 0.0900890697 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
14 Hb_006569_020 0.0908504676 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
15 Hb_159558_030 0.0910101131 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
16 Hb_000359_170 0.0915799616 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
17 Hb_010449_020 0.0923221818 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
18 Hb_001671_080 0.0928962333 - - amino acid binding protein, putative [Ricinus communis]
19 Hb_002762_060 0.0929387855 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
20 Hb_157854_010 0.0929481391 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]

Gene co-expression network

sample Hb_000732_260 Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_033491_010--Hb_000272_100 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_006569_020 Hb_006569_020 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_002249_140--Hb_000784_090 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_007441_340 Hb_007441_340 Hb_001269_150--Hb_007441_340 Hb_001269_150--Hb_001493_100 Hb_002400_220 Hb_002400_220 Hb_001269_150--Hb_002400_220 Hb_000172_120 Hb_000172_120 Hb_001269_150--Hb_000172_120 Hb_004813_010 Hb_004813_010 Hb_001269_150--Hb_004813_010 Hb_003728_020 Hb_003728_020 Hb_001811_150--Hb_003728_020 Hb_003728_030 Hb_003728_030 Hb_001811_150--Hb_003728_030 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.367 9.47299 6.36595 4.38095 30.7377 28.8414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4604 21.7414 22.3906 8.39847 3.6726

CAGE analysis