Hb_000733_020

Information

Type -
Description -
Location Contig733: 10790-14638
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_F20r.ab1: 14759-15504 , 032_C17r.ab1: 15058-15505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_020 0.0 - - -
2 Hb_000739_290 0.264205038 - - cytochrome P450, putative [Ricinus communis]
3 Hb_005228_100 0.2722443659 - - -
4 Hb_027556_010 0.2764967313 - - -
5 Hb_006846_090 0.277999106 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
6 Hb_001946_360 0.2783000308 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
7 Hb_001452_140 0.2803086724 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
8 Hb_005057_010 0.2812276452 - - -
9 Hb_089140_080 0.2812819386 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
10 Hb_003751_110 0.2816724996 - - unknown [Lotus japonicus]
11 Hb_000140_150 0.2839895308 - - -
12 Hb_004648_040 0.2880191773 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
13 Hb_002924_050 0.2905368757 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
14 Hb_000753_210 0.2908523524 - - l-asparaginase, putative [Ricinus communis]
15 Hb_000300_530 0.2918578226 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
16 Hb_001268_230 0.2924186256 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_009680_030 0.2928604055 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
18 Hb_019153_040 0.2935273191 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_011716_040 0.2958909527 - - -
20 Hb_002728_020 0.2970050998 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_020 Hb_000733_020 Hb_000739_290 Hb_000739_290 Hb_000733_020--Hb_000739_290 Hb_005228_100 Hb_005228_100 Hb_000733_020--Hb_005228_100 Hb_027556_010 Hb_027556_010 Hb_000733_020--Hb_027556_010 Hb_006846_090 Hb_006846_090 Hb_000733_020--Hb_006846_090 Hb_001946_360 Hb_001946_360 Hb_000733_020--Hb_001946_360 Hb_001452_140 Hb_001452_140 Hb_000733_020--Hb_001452_140 Hb_000739_290--Hb_005228_100 Hb_000753_210 Hb_000753_210 Hb_000739_290--Hb_000753_210 Hb_029388_040 Hb_029388_040 Hb_000739_290--Hb_029388_040 Hb_002374_440 Hb_002374_440 Hb_000739_290--Hb_002374_440 Hb_000212_130 Hb_000212_130 Hb_000739_290--Hb_000212_130 Hb_000771_160 Hb_000771_160 Hb_000739_290--Hb_000771_160 Hb_005228_100--Hb_002374_440 Hb_005228_100--Hb_029388_040 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_004374_050 Hb_004374_050 Hb_005228_100--Hb_004374_050 Hb_001158_030 Hb_001158_030 Hb_027556_010--Hb_001158_030 Hb_011716_040 Hb_011716_040 Hb_027556_010--Hb_011716_040 Hb_005057_010 Hb_005057_010 Hb_027556_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_027556_010--Hb_000140_150 Hb_000926_270 Hb_000926_270 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_009680_030 Hb_009680_030 Hb_006846_090--Hb_009680_030 Hb_002983_020 Hb_002983_020 Hb_006846_090--Hb_002983_020 Hb_002311_250 Hb_002311_250 Hb_006846_090--Hb_002311_250 Hb_000317_080 Hb_000317_080 Hb_006846_090--Hb_000317_080 Hb_006846_090--Hb_029388_040 Hb_164732_010 Hb_164732_010 Hb_006846_090--Hb_164732_010 Hb_005228_120 Hb_005228_120 Hb_001946_360--Hb_005228_120 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_001946_360--Hb_002311_250 Hb_130177_010 Hb_130177_010 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_019973_030 Hb_019973_030 Hb_001452_140--Hb_019973_030 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_004226_020 Hb_004226_020 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132317 0.0698332 0 0 0.515566 0.13328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260311 0 0.120989 0.0278155 0

CAGE analysis