Hb_000733_030

Information

Type -
Description -
Location Contig733: 14851-15339
Sequence    

Annotation

kegg
ID rcu:RCOM_0497680
description heat-shock protein, putative
nr
ID XP_011036031.1
description PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
swissprot
ID P05478
description 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1
trembl
ID B9SWM7
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0497680 PE=3 SV=1
Gene Ontology
ID GO:0005737
description kda class i heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56146: 14749-15736
cDNA
(Sanger)
(ID:Location)		 001_E24.ab1: 14752-15513 , 002_K22.ab1: 14752-15496 , 005_K03.ab1: 14752-15506 , 005_M18.ab1: 14752-15536 , 006_B05.ab1: 14752-15505 , 006_I04.ab1: 14751-15512 , 007_F02.ab1: 14749-15502 , 007_H12.ab1: 14752-15507 , 008_H06.ab1: 14749-15349 , 009_E03.ab1: 14750-15452 , 009_P02.ab1: 14750-15423 , 010_A16.ab1: 14756-15290 , 010_C24.ab1: 14752-15473 , 010_M01.ab1: 14750-15483 , 011_I05.ab1: 14752-15506 , 012_K11.ab1: 14752-15472 , 012_O02.ab1: 14752-15467 , 014_A06.ab1: 14753-15484 , 014_B23.ab1: 14752-15497 , 014_D10.ab1: 14754-15451 , 014_F14.ab1: 14752-15496 , 015_B09.ab1: 14752-15418 , 015_I24.ab1: 14752-15495 , 017_A05.ab1: 14752-15426 , 017_B24.ab1: 14752-15502 , 017_K14.ab1: 14752-15467 , 019_L18.ab1: 14752-15508 , 019_N24.ab1: 14752-15498 , 022_N13.ab1: 14752-15421 , 023_A14.ab1: 14752-15497 , 024_G06.ab1: 14750-15468 , 025_C06.ab1: 14752-15513 , 025_K08.ab1: 14752-15505 , 026_I18.ab1: 14752-15438 , 027_E21.ab1: 14752-15512 , 027_I01.ab1: 14752-15505 , 028_B01.ab1: 14752-15336 , 029_H12.ab1: 14753-15257 , 029_K22.ab1: 14752-15188 , 030_C08.ab1: 14749-15459 , 030_F21.ab1: 14752-15505 , 030_K05.ab1: 14752-15505 , 031_D15.ab1: 14752-15466 , 031_F05.ab1: 14801-15171 , 032_C17.ab1: 15058-15505 , 033_E12.ab1: 14750-15447 , 033_K08.ab1: 14752-15468 , 033_N13.ab1: 14752-15473 , 035_I18.ab1: 14752-15539 , 035_N22.ab1: 14752-15504 , 038_O23.ab1: 14752-15506 , 039_B11.ab1: 14752-15503 , 039_H17.ab1: 14752-15477 , 039_K12.ab1: 14752-15436 , 039_O14.ab1: 14752-15505 , 041_B14.ab1: 14752-15485 , 044_M14.ab1: 14752-15468 , 044_O13.ab1: 14752-15431 , 045_E23.ab1: 14752-15505 , 045_I07.ab1: 14752-15516 , 045_J01.ab1: 14752-15506 , 045_N07.ab1: 14752-15562 , 046_N16.ab1: 14752-15483 , 047_L10.ab1: 14752-15483 , 047_O23.ab1: 14752-15513 , 048_P11.ab1: 14752-15505 , 051_B18.ab1: 14752-15483 , 052_F07.ab1: 14752-15496 , 053_C19.ab1: 14752-15565

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_030 0.0 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
2 Hb_001349_010 0.1186960415 - - -
3 Hb_004650_070 0.127443597 - - -
4 Hb_025087_010 0.1296226928 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
5 Hb_005000_290 0.1357089289 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
6 Hb_000809_050 0.1370112903 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
7 Hb_002897_060 0.1387662603 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
8 Hb_000310_030 0.1431660211 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
9 Hb_000934_030 0.1459415727 - - -
10 Hb_001198_030 0.1464496596 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
11 Hb_002392_040 0.1477925044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002307_090 0.1497098396 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
13 Hb_009404_020 0.1515541561 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_220 0.1528135347 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
15 Hb_002662_100 0.1534289317 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
16 Hb_015934_020 0.1553000274 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
17 Hb_000567_170 0.1573079447 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
18 Hb_001946_320 0.158543965 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
19 Hb_001153_200 0.1594207614 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
20 Hb_183963_020 0.1599969171 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_030 Hb_000733_030 Hb_001349_010 Hb_001349_010 Hb_000733_030--Hb_001349_010 Hb_004650_070 Hb_004650_070 Hb_000733_030--Hb_004650_070 Hb_025087_010 Hb_025087_010 Hb_000733_030--Hb_025087_010 Hb_005000_290 Hb_005000_290 Hb_000733_030--Hb_005000_290 Hb_000809_050 Hb_000809_050 Hb_000733_030--Hb_000809_050 Hb_002897_060 Hb_002897_060 Hb_000733_030--Hb_002897_060 Hb_000934_030 Hb_000934_030 Hb_001349_010--Hb_000934_030 Hb_001198_030 Hb_001198_030 Hb_001349_010--Hb_001198_030 Hb_042729_010 Hb_042729_010 Hb_001349_010--Hb_042729_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_004650_070--Hb_000809_050 Hb_000085_310 Hb_000085_310 Hb_004650_070--Hb_000085_310 Hb_005955_020 Hb_005955_020 Hb_004650_070--Hb_005955_020 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_028872_050 Hb_028872_050 Hb_004650_070--Hb_028872_050 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_025087_010--Hb_001722_040 Hb_025087_010--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_005000_290--Hb_015934_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000072_280 Hb_000072_280 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_030982_040 Hb_030982_040 Hb_000809_050--Hb_030982_040 Hb_000809_050--Hb_000085_310 Hb_002936_050 Hb_002936_050 Hb_002897_060--Hb_002936_050 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1421.07 706.761 26.3109 122.466 3213.02 2093.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5658.79 4509.09 4371.05 444.727 432.557

CAGE analysis