Hb_000733_060

Information

Type -
Description -
Location Contig733: 49979-57590
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06240g
description POPTRDRAFT_720589; guanylyl cyclase-related family protein
nr
ID XP_012088266.1
description PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
swissprot
ID Q8BZI6
description Protein GUCD1 OS=Mus musculus GN=Gucd1 PE=2 SV=2
trembl
ID A0A067L8S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01356 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56148: 50858-56329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_060 0.0 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
2 Hb_005288_160 0.0713086186 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
3 Hb_023226_060 0.0733080205 - - unnamed protein product [Vitis vinifera]
4 Hb_002631_050 0.0768681914 - - membrane associated ring finger 1,8, putative [Ricinus communis]
5 Hb_022256_040 0.0786501498 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
6 Hb_000768_030 0.0806354544 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
7 Hb_001001_160 0.0808774689 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
8 Hb_000340_510 0.0837565605 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
9 Hb_002249_140 0.0902812669 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
10 Hb_006029_010 0.0914709515 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
11 Hb_000481_010 0.0922409154 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
12 Hb_001341_040 0.0925623245 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
13 Hb_182026_010 0.0935802038 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
14 Hb_005527_050 0.0938276783 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
15 Hb_002377_050 0.0957332574 - - Agmatine deiminase, putative [Ricinus communis]
16 Hb_000771_110 0.096339664 - - protein phosphatase 2C [Hevea brasiliensis]
17 Hb_003453_020 0.0970388227 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
18 Hb_004096_170 0.0974749358 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
19 Hb_002997_100 0.0978361823 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
20 Hb_002818_040 0.0984238184 - - tRNA synthetase-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000733_060 Hb_000733_060 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_003605_070 Hb_003605_070 Hb_005288_160--Hb_003605_070 Hb_005288_160--Hb_023226_060 Hb_128548_020 Hb_128548_020 Hb_005288_160--Hb_128548_020 Hb_005288_160--Hb_002631_050 Hb_003453_020 Hb_003453_020 Hb_005288_160--Hb_003453_020 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_023226_060--Hb_000768_030 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_002631_050--Hb_022256_040 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_000768_030--Hb_000175_490 Hb_000768_030--Hb_003453_020 Hb_004032_050 Hb_004032_050 Hb_000768_030--Hb_004032_050 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_000025_200 Hb_000025_200 Hb_001001_160--Hb_000025_200 Hb_010174_130 Hb_010174_130 Hb_001001_160--Hb_010174_130 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5899 8.39584 7.827 7.75779 65.5805 38.1835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2568 23.8696 32.5151 12.0826 5.25469

CAGE analysis