Hb_000733_180

Information

Type -
Description -
Location Contig733: 144917-150457
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20490g
description POPTRDRAFT_833789; mitochondrial substrate carrier family protein
nr
ID XP_012088383.1
description PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
swissprot
ID Q54MZ4
description Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1
trembl
ID A0A067LKK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01364 PE=3 SV=1
Gene Ontology
ID GO:0005886
description mitochondrial substrate carrier family protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56155: 144902-150463 , PASA_asmbl_56157: 148561-148804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_180 0.0 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
2 Hb_000309_130 0.0665324987 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
3 Hb_001013_030 0.0668419346 - - GTP-binding protein yptv3, putative [Ricinus communis]
4 Hb_000436_130 0.0716006391 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
5 Hb_000928_070 0.0748933684 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_002677_020 0.0795344794 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
7 Hb_003124_150 0.0795530522 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
8 Hb_000505_130 0.0803279112 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
9 Hb_158445_010 0.0814947721 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
10 Hb_009339_030 0.084299732 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
11 Hb_000310_020 0.0851337537 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
12 Hb_001541_120 0.0861955713 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_006740_030 0.0863912629 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
14 Hb_000327_060 0.0883962164 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
15 Hb_005843_140 0.090312476 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
16 Hb_008566_030 0.0912859033 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
17 Hb_000403_070 0.0939729433 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000221_190 0.094275625 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
19 Hb_000140_090 0.0944075348 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
20 Hb_000566_120 0.0951418367 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000733_180 Hb_000733_180 Hb_000309_130 Hb_000309_130 Hb_000733_180--Hb_000309_130 Hb_001013_030 Hb_001013_030 Hb_000733_180--Hb_001013_030 Hb_000436_130 Hb_000436_130 Hb_000733_180--Hb_000436_130 Hb_000928_070 Hb_000928_070 Hb_000733_180--Hb_000928_070 Hb_002677_020 Hb_002677_020 Hb_000733_180--Hb_002677_020 Hb_003124_150 Hb_003124_150 Hb_000733_180--Hb_003124_150 Hb_000309_130--Hb_003124_150 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_001019_100 Hb_001019_100 Hb_000309_130--Hb_001019_100 Hb_000221_190 Hb_000221_190 Hb_000309_130--Hb_000221_190 Hb_009339_030 Hb_009339_030 Hb_001013_030--Hb_009339_030 Hb_001013_030--Hb_000436_130 Hb_005765_050 Hb_005765_050 Hb_001013_030--Hb_005765_050 Hb_004889_020 Hb_004889_020 Hb_001013_030--Hb_004889_020 Hb_000676_390 Hb_000676_390 Hb_001013_030--Hb_000676_390 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04633 6.70773 10.9709 11.296 4.28671 6.70929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4974 18.7908 16.5024 6.69823 12.3748

CAGE analysis