Hb_000733_200

Information

Type -
Description -
Location Contig733: 165507-170039
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06110g
description POPTRDRAFT_832567; type 1 protein phosphatase-1
nr
ID XP_012088399.1
description PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
swissprot
ID P48484
description Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=1 SV=1
trembl
ID A0A067L8Y8
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_01367 PE=3 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56158: 165662-170024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_200 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
2 Hb_164010_040 0.0668670452 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_004162_130 0.0727476 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_140 0.0747459845 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
5 Hb_005867_090 0.077699164 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
6 Hb_017895_040 0.079597211 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
7 Hb_000221_190 0.0814949542 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
8 Hb_003057_060 0.0818193399 - - conserved hypothetical protein [Ricinus communis]
9 Hb_022250_060 0.0822157376 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
10 Hb_013575_010 0.0828087745 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
11 Hb_161574_020 0.0828235043 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
12 Hb_000608_050 0.0842969071 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_001278_100 0.0851358909 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
14 Hb_000270_310 0.0857684155 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
15 Hb_062226_130 0.086267671 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
16 Hb_000300_260 0.0868046402 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
17 Hb_000365_270 0.0877349408 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
18 Hb_000086_170 0.0878526349 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
19 Hb_005162_090 0.088461604 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
20 Hb_000505_130 0.0915339005 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_200 Hb_000733_200 Hb_164010_040 Hb_164010_040 Hb_000733_200--Hb_164010_040 Hb_004162_130 Hb_004162_130 Hb_000733_200--Hb_004162_130 Hb_000086_140 Hb_000086_140 Hb_000733_200--Hb_000086_140 Hb_005867_090 Hb_005867_090 Hb_000733_200--Hb_005867_090 Hb_017895_040 Hb_017895_040 Hb_000733_200--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000733_200--Hb_000221_190 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_000375_350 Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010 Hb_000608_050 Hb_000608_050 Hb_000086_140--Hb_000608_050 Hb_000365_270 Hb_000365_270 Hb_000086_140--Hb_000365_270 Hb_000086_140--Hb_017895_040 Hb_000086_140--Hb_000221_190 Hb_000086_140--Hb_005867_090 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_005867_090--Hb_164010_040 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150 Hb_017895_040--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_005496_140 Hb_005496_140 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_000221_190--Hb_001278_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76084 12.3437 19.8343 20.2808 8.24775 10.2356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3795 20.4257 15.6173 8.69803 8.22385

CAGE analysis