Hb_000733_270

Information

Type -
Description -
Location Contig733: 229760-232858
Sequence    

Annotation

kegg
ID phu:Phum_PHUM215490
description serine/threonine-protein phosphatase 4 catalytic subunit, putative
nr
ID XP_004481685.1
description PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
swissprot
ID -
description -
trembl
ID K7IS58
description Serine/threonine-protein phosphatase OS=Nasonia vitripennis GN=LOC100117237 PE=3 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_270 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
2 Hb_004724_120 0.177600916 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
3 Hb_084470_010 0.1850271718 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_002235_140 0.2214105367 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000021_100 0.2262760881 - - -
6 Hb_007785_010 0.2283418541 - - glutathione peroxidase, putative [Ricinus communis]
7 Hb_003073_170 0.2317897789 - - -
8 Hb_007333_040 0.2338340294 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
9 Hb_054586_020 0.2353196435 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
10 Hb_009848_040 0.2387193124 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
11 Hb_054885_020 0.2422987786 - - -
12 Hb_003157_030 0.2431851783 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
13 Hb_011206_010 0.2477787403 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
14 Hb_007846_040 0.2484014691 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
15 Hb_134894_010 0.2503264245 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
16 Hb_141212_010 0.2526598882 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_097347_010 0.2536208757 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
18 Hb_005144_030 0.2542751123 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
19 Hb_002666_020 0.2547815058 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
20 Hb_002546_040 0.2560858876 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]

Gene co-expression network

sample Hb_000733_270 Hb_000733_270 Hb_004724_120 Hb_004724_120 Hb_000733_270--Hb_004724_120 Hb_084470_010 Hb_084470_010 Hb_000733_270--Hb_084470_010 Hb_002235_140 Hb_002235_140 Hb_000733_270--Hb_002235_140 Hb_000021_100 Hb_000021_100 Hb_000733_270--Hb_000021_100 Hb_007785_010 Hb_007785_010 Hb_000733_270--Hb_007785_010 Hb_003073_170 Hb_003073_170 Hb_000733_270--Hb_003073_170 Hb_000130_060 Hb_000130_060 Hb_004724_120--Hb_000130_060 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_009848_020 Hb_009848_020 Hb_084470_010--Hb_009848_020 Hb_003157_030 Hb_003157_030 Hb_084470_010--Hb_003157_030 Hb_141212_010 Hb_141212_010 Hb_084470_010--Hb_141212_010 Hb_003854_020 Hb_003854_020 Hb_084470_010--Hb_003854_020 Hb_018118_020 Hb_018118_020 Hb_084470_010--Hb_018118_020 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_009848_040 Hb_009848_040 Hb_002235_140--Hb_009848_040 Hb_001396_150 Hb_001396_150 Hb_002235_140--Hb_001396_150 Hb_009848_030 Hb_009848_030 Hb_002235_140--Hb_009848_030 Hb_000375_370 Hb_000375_370 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_011206_010 Hb_011206_010 Hb_000021_100--Hb_011206_010 Hb_000085_090 Hb_000085_090 Hb_000021_100--Hb_000085_090 Hb_000021_100--Hb_002235_140 Hb_000027_030 Hb_000027_030 Hb_000021_100--Hb_000027_030 Hb_007380_110 Hb_007380_110 Hb_000021_100--Hb_007380_110 Hb_003107_020 Hb_003107_020 Hb_007785_010--Hb_003107_020 Hb_003640_030 Hb_003640_030 Hb_007785_010--Hb_003640_030 Hb_011716_110 Hb_011716_110 Hb_007785_010--Hb_011716_110 Hb_029977_050 Hb_029977_050 Hb_007785_010--Hb_029977_050 Hb_007785_010--Hb_003073_170 Hb_039342_010 Hb_039342_010 Hb_007785_010--Hb_039342_010 Hb_151463_010 Hb_151463_010 Hb_003073_170--Hb_151463_010 Hb_003073_170--Hb_003107_020 Hb_000853_030 Hb_000853_030 Hb_003073_170--Hb_000853_030 Hb_003073_170--Hb_054885_020 Hb_001989_020 Hb_001989_020 Hb_003073_170--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04506 2.09793 0.198781 1.72296 1.09102 4.82124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13732 0.252023 0.19983 3.09258 0

CAGE analysis