Hb_000735_020

Information

Type -
Description -
Location Contig735: 6366-7100
Sequence    

Annotation

kegg
ID rcu:RCOM_0318590
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002533063.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q94BT2
description Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3
trembl
ID B9T494
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0318590 PE=4 SV=1
Gene Ontology
ID GO:0016020
description auxin-induced in root cultures protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_020 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_001085_190 0.053583102 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_012518_080 0.0657569095 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
4 Hb_011918_070 0.0826181058 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_033312_070 0.083991002 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
6 Hb_002292_080 0.0929160679 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_006788_110 0.0948547775 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
8 Hb_025787_020 0.0970975521 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_000003_750 0.1002541613 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_015934_080 0.1008696463 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_003935_040 0.1012139298 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
12 Hb_002272_120 0.1016028272 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_000303_060 0.1016545752 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_000984_130 0.1023132113 - - tubulin [Ornithogalum longebracteatum]
15 Hb_064546_010 0.1086609416 - - PREDICTED: peroxidase 3 [Jatropha curcas]
16 Hb_002073_170 0.1089788063 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
17 Hb_001396_030 0.1145703084 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
18 Hb_001140_300 0.1154557068 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
19 Hb_116647_010 0.1158949773 - - conserved hypothetical protein [Ricinus communis]
20 Hb_085962_010 0.1162311029 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]

Gene co-expression network

sample Hb_000735_020 Hb_000735_020 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_011918_070 Hb_011918_070 Hb_000735_020--Hb_011918_070 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050 Hb_012518_080--Hb_002292_080 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_012518_080--Hb_033312_070 Hb_012518_080--Hb_011918_070 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_033312_070--Hb_006788_110 Hb_033312_070--Hb_011918_070 Hb_015934_080 Hb_015934_080 Hb_033312_070--Hb_015934_080 Hb_033312_070--Hb_001085_190 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_006788_110--Hb_011918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468986 4.11163 25.4445 48.0342 0.0307787 0.237355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.302564 0.297346 0.533406 7.46142 16.4438

CAGE analysis