Hb_000735_040

Information

Type -
Description -
Location Contig735: 17241-23098
Sequence    

Annotation

kegg
ID tcc:TCM_029566
description Ribosomal protein L32e isoform 1
nr
ID ADR71279.1
description 60S ribosomal protein L32A [Hevea brasiliensis]
swissprot
ID P49211
description 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2
trembl
ID I3NMP3
description 60S ribosomal protein L32A OS=Hevea brasiliensis GN=RPL32B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56179: 16588-23155
cDNA
(Sanger)
(ID:Location)		 004_L09.ab1: 16588-22976 , 017_H23.ab1: 16588-23038 , 020_L08.ab1: 16588-22971 , 027_D20.ab1: 16585-23002 , 038_O24.ab1: 16635-22986 , 038_P15.ab1: 16588-22958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_040 0.0 - - 60S ribosomal protein L32A [Hevea brasiliensis]
2 Hb_174865_010 0.0463966414 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
3 Hb_000506_070 0.0568456542 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_001141_140 0.0569604119 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
5 Hb_000093_110 0.0573912132 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
6 Hb_008921_020 0.0627076375 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
7 Hb_003018_020 0.068745455 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
8 Hb_000676_160 0.0690879541 - - folate carrier protein, putative [Ricinus communis]
9 Hb_000576_060 0.071371892 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
10 Hb_000062_650 0.0715414181 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
11 Hb_006478_160 0.0723282175 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
12 Hb_009476_020 0.0728916241 - - tryptophan biosynthesis protein, putative [Ricinus communis]
13 Hb_002588_010 0.0744809288 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
14 Hb_000317_070 0.0754645265 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
15 Hb_179296_010 0.0773705822 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
16 Hb_003226_100 0.0793282319 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
17 Hb_000567_410 0.0818291714 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
18 Hb_006925_040 0.0830464807 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
19 Hb_004157_030 0.0848998229 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
20 Hb_005063_050 0.0857034591 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000735_040 Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_001141_140--Hb_003226_100 Hb_007044_130 Hb_007044_130 Hb_001141_140--Hb_007044_130 Hb_001141_140--Hb_003018_020 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_000093_110--Hb_174865_010 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_008921_020--Hb_000062_650 Hb_008921_020--Hb_000506_070 Hb_008921_020--Hb_001141_140 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.455 83.1798 198.263 182.225 108.333 151.447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
338.958 766.035 222.58 164.141 96.4711

CAGE analysis