Hb_000735_060

Information

Type -
Description -
Location Contig735: 39092-42108
Sequence    

Annotation

kegg
ID rcu:RCOM_0379340
description Spotted leaf protein, putative
nr
ID XP_012085141.1
description PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
swissprot
ID Q9SRT0
description U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1
trembl
ID A0A067LKQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15135 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56184: 39061-39598 , PASA_asmbl_56185: 40589-41063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_060 0.0 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
2 Hb_005568_020 0.0769424752 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
3 Hb_003606_050 0.081517205 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
4 Hb_022092_110 0.0894293055 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
5 Hb_001936_180 0.0949835472 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
6 Hb_000418_170 0.1052696307 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
7 Hb_000008_200 0.1116734127 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
8 Hb_001019_160 0.1155076162 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001823_090 0.1162735232 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000834_220 0.1168533048 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
11 Hb_010672_050 0.1188208362 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
12 Hb_000207_350 0.118897924 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
13 Hb_001123_310 0.1253106296 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_001085_190 0.1256579322 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_001104_150 0.1290423117 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_128196_010 0.1299420114 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003573_050 0.12995036 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_003540_120 0.1305592145 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_002027_430 0.1306074485 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
20 Hb_001597_030 0.132461451 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000735_060 Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_000735_060--Hb_005568_020 Hb_003606_050 Hb_003606_050 Hb_000735_060--Hb_003606_050 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170 Hb_000008_200 Hb_000008_200 Hb_000735_060--Hb_000008_200 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_005568_020--Hb_003606_050 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_003606_050--Hb_001936_180 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001440_010 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_001936_180--Hb_000418_170 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_005675_050 Hb_005675_050 Hb_000418_170--Hb_005675_050 Hb_021065_010 Hb_021065_010 Hb_000418_170--Hb_021065_010 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104852 2.19124 8.59165 9.09455 0.0753602 0.246445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.326936 0.296807 0.224512 2.41914 3.58541

CAGE analysis