Hb_000735_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig735: 126111-128787
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24990g
description POPTRDRAFT_553223; basic helix-loop-helix family protein
nr
ID XP_002303073.2
description basic helix-loop-helix family protein [Populus trichocarpa]
swissprot
ID Q9SRT2
description Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1
trembl
ID B9GQN9
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0002s24990g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor bhlh62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56186: 125947-128770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_070 0.0 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
2 Hb_002524_030 0.1433763696 - - -
3 Hb_000227_330 0.1754693297 - - Acyl-CoA synthetase [Ricinus communis]
4 Hb_000347_110 0.1834139453 - - BnaA05g25330D [Brassica napus]
5 Hb_005217_040 0.1852156327 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
6 Hb_000816_020 0.1877034746 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
7 Hb_003517_020 0.1885120521 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
8 Hb_007919_040 0.1898729095 - - PREDICTED: protein LYK5 [Jatropha curcas]
9 Hb_000081_120 0.1901680962 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
10 Hb_000094_370 0.1909441181 - - -
11 Hb_007472_080 0.1935445139 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
12 Hb_053575_020 0.195367635 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
13 Hb_004657_060 0.1955282295 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
14 Hb_000684_360 0.1968189277 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
15 Hb_011853_010 0.1976668626 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
16 Hb_032225_040 0.19771373 - - -
17 Hb_101449_010 0.197851786 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
18 Hb_000866_110 0.2003185222 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
19 Hb_082683_010 0.2020701556 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_074506_010 0.2036999219 - - JHL25H03.10 [Jatropha curcas]

Gene co-expression network

sample Hb_000735_070 Hb_000735_070 Hb_002524_030 Hb_002524_030 Hb_000735_070--Hb_002524_030 Hb_000227_330 Hb_000227_330 Hb_000735_070--Hb_000227_330 Hb_000347_110 Hb_000347_110 Hb_000735_070--Hb_000347_110 Hb_005217_040 Hb_005217_040 Hb_000735_070--Hb_005217_040 Hb_000816_020 Hb_000816_020 Hb_000735_070--Hb_000816_020 Hb_003517_020 Hb_003517_020 Hb_000735_070--Hb_003517_020 Hb_000661_260 Hb_000661_260 Hb_002524_030--Hb_000661_260 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002153_030 Hb_002153_030 Hb_002524_030--Hb_002153_030 Hb_002524_030--Hb_003517_020 Hb_001322_180 Hb_001322_180 Hb_002524_030--Hb_001322_180 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000125_180 Hb_000125_180 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_004041_100 Hb_004041_100 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_011032_010 Hb_011032_010 Hb_005217_040--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_005217_040--Hb_003125_180 Hb_005217_040--Hb_053575_020 Hb_065500_010 Hb_065500_010 Hb_005217_040--Hb_065500_010 Hb_000019_170 Hb_000019_170 Hb_005217_040--Hb_000019_170 Hb_169051_010 Hb_169051_010 Hb_005217_040--Hb_169051_010 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_000313_370 Hb_000313_370 Hb_003517_020--Hb_000313_370 Hb_003576_050 Hb_003576_050 Hb_003517_020--Hb_003576_050 Hb_000928_040 Hb_000928_040 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_007919_040 Hb_007919_040 Hb_003517_020--Hb_007919_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0642 7.61084 1.66587 3.76335 0.802715 0.290273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02896 1.41681 0.941271 13.5909 7.42015

CAGE analysis