Hb_000735_090

Information

Type -
Description -
Location Contig735: 156767-161478
Sequence    

Annotation

kegg
ID zma:542341
description RPS8; ribosomal protein S8
nr
ID XP_012473594.1
description PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
swissprot
ID Q08069
description 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2
trembl
ID J3LWX9
description 40S ribosomal protein S8 OS=Oryza brachyantha GN=OB04G16540 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56188: 156804-161440 , PASA_asmbl_56189: 157906-158040
cDNA
(Sanger)
(ID:Location)		 034_G16.ab1: 157028-161440 , 037_P20.ab1: 157023-161440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_090 0.0 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
2 Hb_007747_050 0.0643904633 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
3 Hb_001989_090 0.0654862631 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
4 Hb_007065_010 0.0668475266 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
5 Hb_003494_050 0.0685790668 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
6 Hb_000016_080 0.0751606902 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
7 Hb_000085_350 0.0767485036 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
8 Hb_000836_470 0.0776490064 - - -
9 Hb_002811_170 0.0784740727 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_004767_080 0.079964023 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
11 Hb_000571_020 0.0807380889 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
12 Hb_091433_020 0.0818991774 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_000254_050 0.0826344782 - - hypothetical protein VITISV_010510 [Vitis vinifera]
14 Hb_002798_020 0.0877700828 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
15 Hb_001863_430 0.0895350533 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
16 Hb_001512_080 0.0898549547 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
17 Hb_000676_160 0.0902368733 - - folate carrier protein, putative [Ricinus communis]
18 Hb_003018_020 0.0902632891 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
19 Hb_005269_080 0.0913758188 - - protein with unknown function [Ricinus communis]
20 Hb_002056_050 0.092098991 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]

Gene co-expression network

sample Hb_000735_090 Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_000735_090--Hb_007747_050 Hb_001989_090 Hb_001989_090 Hb_000735_090--Hb_001989_090 Hb_007065_010 Hb_007065_010 Hb_000735_090--Hb_007065_010 Hb_003494_050 Hb_003494_050 Hb_000735_090--Hb_003494_050 Hb_000016_080 Hb_000016_080 Hb_000735_090--Hb_000016_080 Hb_000085_350 Hb_000085_350 Hb_000735_090--Hb_000085_350 Hb_002811_170 Hb_002811_170 Hb_007747_050--Hb_002811_170 Hb_000419_020 Hb_000419_020 Hb_007747_050--Hb_000419_020 Hb_007747_050--Hb_003494_050 Hb_007747_050--Hb_000085_350 Hb_001863_430 Hb_001863_430 Hb_007747_050--Hb_001863_430 Hb_001989_090--Hb_007065_010 Hb_000836_470 Hb_000836_470 Hb_001989_090--Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_001989_090--Hb_001728_030 Hb_005305_150 Hb_005305_150 Hb_001989_090--Hb_005305_150 Hb_002798_020 Hb_002798_020 Hb_001989_090--Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_003494_050--Hb_002811_170 Hb_000016_080--Hb_000789_230 Hb_000254_050 Hb_000254_050 Hb_000016_080--Hb_000254_050 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_000016_080--Hb_002613_020 Hb_000538_120 Hb_000538_120 Hb_000085_350--Hb_000538_120 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_000085_350--Hb_002811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7787 24.0034 57.3235 71.6895 42.2178 46.9091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.0891 205.645 73.0086 81.1556 52.7435

CAGE analysis