Hb_000735_120

Information

Type -
Description -
Location Contig735: 176593-177660
Sequence    

Annotation

kegg
ID rcu:RCOM_0242130
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085223.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
swissprot
ID Q9LSF5
description Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1
trembl
ID A0A067LA70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15142 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
2 Hb_000046_450 0.0854857888 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_002270_010 0.0903436498 - - Chaperone protein dnaJ, putative [Ricinus communis]
4 Hb_000367_290 0.0938014253 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
5 Hb_000172_550 0.0938849449 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
6 Hb_000116_280 0.0948777043 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
7 Hb_005399_020 0.0955938199 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
8 Hb_002105_080 0.0963535188 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_012395_160 0.0971124752 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
10 Hb_005295_040 0.0980049494 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
11 Hb_001975_020 0.0988017842 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
12 Hb_000327_310 0.1010257753 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_025477_060 0.102580911 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_001157_180 0.1040987443 - - protein binding protein, putative [Ricinus communis]
15 Hb_006816_300 0.104542006 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
16 Hb_000076_290 0.1048148366 - - translation factor sui1, putative [Ricinus communis]
17 Hb_004032_350 0.105150202 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
18 Hb_000808_180 0.1057793357 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
19 Hb_001584_170 0.1062913432 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_000002_440 0.106358994 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_000735_120 Hb_000735_120 Hb_000046_450 Hb_000046_450 Hb_000735_120--Hb_000046_450 Hb_002270_010 Hb_002270_010 Hb_000735_120--Hb_002270_010 Hb_000367_290 Hb_000367_290 Hb_000735_120--Hb_000367_290 Hb_000172_550 Hb_000172_550 Hb_000735_120--Hb_000172_550 Hb_000116_280 Hb_000116_280 Hb_000735_120--Hb_000116_280 Hb_005399_020 Hb_005399_020 Hb_000735_120--Hb_005399_020 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_002270_010--Hb_000172_550 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000029_160 Hb_000029_160 Hb_000172_550--Hb_000029_160 Hb_000172_550--Hb_000076_290 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_000172_550--Hb_005295_040 Hb_000116_280--Hb_005399_020 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_001975_020 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_012395_160 Hb_012395_160 Hb_005399_020--Hb_012395_160 Hb_005038_020 Hb_005038_020 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_005399_020--Hb_000367_290 Hb_148209_020 Hb_148209_020 Hb_005399_020--Hb_148209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1556 18.8132 1.71268 3.95228 22.1502 28.6325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1381 5.40179 12.1574 6.94968 5.96569

CAGE analysis