Hb_000735_130

Information

Type -
Description -
Location Contig735: 177923-181475
Sequence    

Annotation

kegg
ID rcu:RCOM_0242120
description hypothetical protein
nr
ID XP_002534358.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7Y9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0242120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56192: 175587-177862 , PASA_asmbl_56193: 178063-181467 , PASA_asmbl_56194: 178047-181463 , PASA_asmbl_56195: 178164-178649 , PASA_asmbl_56196: 179275-179437
cDNA
(Sanger)
(ID:Location)		 009_N10.ab1: 178047-180863 , 012_L13.ab1: 178063-180837 , 021_B22.ab1: 178063-180906

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000062_340 0.1064980136 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_012505_010 0.1111128773 - - mak, putative [Ricinus communis]
4 Hb_001277_070 0.1155915198 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
5 Hb_044662_070 0.1186548879 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
6 Hb_003376_120 0.1186612407 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
7 Hb_004048_110 0.1205825469 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
8 Hb_000483_410 0.1229522145 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
9 Hb_000012_130 0.1231298598 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
10 Hb_000648_060 0.1244135518 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
11 Hb_000505_010 0.1250718666 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
12 Hb_000270_270 0.1251406733 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
13 Hb_004108_230 0.1258203521 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
14 Hb_065500_050 0.1264953653 - - lipoate-protein ligase B, putative [Ricinus communis]
15 Hb_000331_440 0.1273758362 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
16 Hb_001053_180 0.1283468516 - - protein binding protein, putative [Ricinus communis]
17 Hb_001396_180 0.128759108 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
18 Hb_004317_040 0.1287724249 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
19 Hb_010142_070 0.1295201897 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
20 Hb_000127_010 0.1297136023 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]

Gene co-expression network

sample Hb_000735_130 Hb_000735_130 Hb_000062_340 Hb_000062_340 Hb_000735_130--Hb_000062_340 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_044662_070 Hb_044662_070 Hb_000735_130--Hb_044662_070 Hb_003376_120 Hb_003376_120 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110 Hb_000975_300 Hb_000975_300 Hb_000062_340--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_000062_340--Hb_007594_120 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_010142_070 Hb_010142_070 Hb_000062_340--Hb_010142_070 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_012505_010--Hb_001277_070 Hb_004375_140 Hb_004375_140 Hb_012505_010--Hb_004375_140 Hb_129204_030 Hb_129204_030 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_044662_070--Hb_003376_120 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003408_030 Hb_003408_030 Hb_003376_120--Hb_003408_030 Hb_003376_120--Hb_023386_080 Hb_003376_120--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003376_120--Hb_000627_120 Hb_008878_030 Hb_008878_030 Hb_004048_110--Hb_008878_030 Hb_004048_110--Hb_153112_020 Hb_001292_020 Hb_001292_020 Hb_004048_110--Hb_001292_020 Hb_002214_040 Hb_002214_040 Hb_004048_110--Hb_002214_040 Hb_012725_050 Hb_012725_050 Hb_004048_110--Hb_012725_050 Hb_001545_140 Hb_001545_140 Hb_004048_110--Hb_001545_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.076 3.24896 35.0199 11.7903 32.1731 38.4388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.9278 79.3348 82.4072 10.7569 23.9709

CAGE analysis