Hb_000735_140

Information

Type -
Description -
Location Contig735: 184642-186845
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24930g
description 3-glucanase family protein
nr
ID XP_006386885.1
description 3-glucanase family protein [Populus trichocarpa]
swissprot
ID Q06915
description Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1
trembl
ID B9NHS7
description 3-glucanase family protein OS=Populus trichocarpa GN=POPTR_0002s24930g PE=4 SV=1
Gene Ontology
ID GO:0009505
description probable glucan endo- -beta-glucosidase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56197: 184706-186768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_140 0.0 - - 3-glucanase family protein [Populus trichocarpa]
2 Hb_002849_070 0.0992615432 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
3 Hb_003849_190 0.1055772759 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
4 Hb_143766_030 0.1099767472 - - protein with unknown function [Ricinus communis]
5 Hb_000111_370 0.1113755841 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
6 Hb_000735_080 0.1121805984 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
7 Hb_000056_080 0.1134765444 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
8 Hb_000200_170 0.1162968466 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
9 Hb_001474_050 0.1182701957 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_008112_010 0.1203103145 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
11 Hb_002349_030 0.1249789373 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003670_030 0.1249980402 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
13 Hb_005064_070 0.1266398215 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
14 Hb_004724_330 0.1299775517 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
15 Hb_000203_270 0.1301974889 - - alpha-xylosidase, putative [Ricinus communis]
16 Hb_023344_110 0.1306061897 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
17 Hb_000836_600 0.1309254545 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
18 Hb_132840_030 0.131848935 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
19 Hb_033363_010 0.1318741423 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
20 Hb_014720_050 0.1323866218 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]

Gene co-expression network

sample Hb_000735_140 Hb_000735_140 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_143766_030 Hb_143766_030 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000056_080 Hb_000056_080 Hb_000735_140--Hb_000056_080 Hb_000200_170 Hb_000200_170 Hb_002849_070--Hb_000200_170 Hb_002849_070--Hb_000056_080 Hb_000203_270 Hb_000203_270 Hb_002849_070--Hb_000203_270 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_003849_190--Hb_000056_080 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_143766_030--Hb_000200_170 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_009372_020 Hb_009372_020 Hb_000111_370--Hb_009372_020 Hb_000111_370--Hb_033363_010 Hb_000015_200 Hb_000015_200 Hb_000111_370--Hb_000015_200 Hb_004375_110 Hb_004375_110 Hb_000111_370--Hb_004375_110 Hb_003964_110 Hb_003964_110 Hb_000111_370--Hb_003964_110 Hb_004680_010 Hb_004680_010 Hb_000111_370--Hb_004680_010 Hb_000735_080--Hb_004680_010 Hb_016734_010 Hb_016734_010 Hb_000735_080--Hb_016734_010 Hb_000735_080--Hb_000203_270 Hb_002304_050 Hb_002304_050 Hb_000735_080--Hb_002304_050 Hb_000012_240 Hb_000012_240 Hb_000735_080--Hb_000012_240 Hb_000056_080--Hb_000200_170 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24252 43.8261 29.3805 48.39 4.71494 3.29749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53163 4.3873 11.5937 16.7661 20.3574

CAGE analysis