Hb_000735_160

Information

Type -
Description -
Location Contig735: 192185-196202
Sequence    

Annotation

kegg
ID rcu:RCOM_1416580
description hypothetical protein
nr
ID XP_012085283.1
description PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15145 PE=4 SV=1
Gene Ontology
ID GO:0016740
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56198: 192386-196194 , PASA_asmbl_56199: 193479-194215
cDNA
(Sanger)
(ID:Location)		 023_O19.ab1: 192377-195259 , 041_N19.ab1: 192386-195464 , 044_E19.ab1: 192377-195505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_160 0.0 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
2 Hb_004371_010 0.0881829016 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
3 Hb_010487_020 0.0920215703 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
4 Hb_000347_120 0.0943835244 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
5 Hb_000094_320 0.098960718 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
6 Hb_000925_160 0.1037428598 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
7 Hb_001080_230 0.1080176555 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
8 Hb_007054_040 0.1080666007 - - PREDICTED: protein RST1 [Jatropha curcas]
9 Hb_001511_110 0.1110519506 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
10 Hb_120803_010 0.1111880708 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
11 Hb_003435_050 0.1122214608 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
12 Hb_000556_170 0.1125846731 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
13 Hb_001104_190 0.1171585186 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_003060_090 0.1181163924 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
15 Hb_007426_060 0.1183722506 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
16 Hb_000373_100 0.1187590566 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_000768_180 0.1193559286 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
18 Hb_004480_040 0.1197183463 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
19 Hb_005496_110 0.1199175509 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
20 Hb_002872_040 0.1203604772 - - pumilio, putative [Ricinus communis]

Gene co-expression network

sample Hb_000735_160 Hb_000735_160 Hb_004371_010 Hb_004371_010 Hb_000735_160--Hb_004371_010 Hb_010487_020 Hb_010487_020 Hb_000735_160--Hb_010487_020 Hb_000347_120 Hb_000347_120 Hb_000735_160--Hb_000347_120 Hb_000094_320 Hb_000094_320 Hb_000735_160--Hb_000094_320 Hb_000925_160 Hb_000925_160 Hb_000735_160--Hb_000925_160 Hb_001080_230 Hb_001080_230 Hb_000735_160--Hb_001080_230 Hb_004371_010--Hb_000094_320 Hb_000061_490 Hb_000061_490 Hb_004371_010--Hb_000061_490 Hb_000768_180 Hb_000768_180 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_004371_010--Hb_000347_120 Hb_013399_070 Hb_013399_070 Hb_010487_020--Hb_013399_070 Hb_010487_020--Hb_001080_230 Hb_010487_020--Hb_004371_010 Hb_001821_090 Hb_001821_090 Hb_010487_020--Hb_001821_090 Hb_004483_040 Hb_004483_040 Hb_010487_020--Hb_004483_040 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_007193_110 Hb_007193_110 Hb_000094_320--Hb_007193_110 Hb_012114_050 Hb_012114_050 Hb_000094_320--Hb_012114_050 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_000094_320--Hb_004410_070 Hb_000627_180 Hb_000627_180 Hb_000925_160--Hb_000627_180 Hb_000925_160--Hb_144744_010 Hb_000236_410 Hb_000236_410 Hb_000925_160--Hb_000236_410 Hb_001205_030 Hb_001205_030 Hb_000925_160--Hb_001205_030 Hb_000390_100 Hb_000390_100 Hb_000925_160--Hb_000390_100 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1914 104.206 32.658 12.8328 39.9868 43.6038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1078 26.6054 24.1688 49.1318 35.9714

CAGE analysis