Hb_000737_010

Information

Type -
Description -
Location Contig737: 27070-38079
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01040g
description POPTRDRAFT_654383; hypothetical protein
nr
ID XP_012088244.1
description PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
swissprot
ID Q9FKW0
description Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2
trembl
ID A0A067JMQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25760 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56213: 27112-27437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000737_010 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
2 Hb_000438_010 0.1018782042 - - -
3 Hb_007575_030 0.1241040197 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
4 Hb_000165_070 0.1248005055 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
5 Hb_000791_050 0.1257268965 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
6 Hb_004096_220 0.1319833029 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
7 Hb_000936_090 0.1353161135 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
8 Hb_002432_050 0.1361131073 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
9 Hb_000416_190 0.138957719 - - -
10 Hb_000318_170 0.1408181037 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
11 Hb_001821_060 0.1412449011 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
12 Hb_012033_010 0.1427768168 - - PREDICTED: histone H1.2-like [Jatropha curcas]
13 Hb_013968_010 0.1470102871 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_000261_310 0.1494037124 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
15 Hb_001001_090 0.1508002886 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
16 Hb_003226_090 0.1516290025 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
17 Hb_005568_050 0.1525739109 - - ascorbate peroxidase [Hevea brasiliensis]
18 Hb_005582_030 0.1541957869 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
19 Hb_001277_400 0.154986963 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
20 Hb_000061_310 0.1552356268 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000737_010 Hb_000737_010 Hb_000438_010 Hb_000438_010 Hb_000737_010--Hb_000438_010 Hb_007575_030 Hb_007575_030 Hb_000737_010--Hb_007575_030 Hb_000165_070 Hb_000165_070 Hb_000737_010--Hb_000165_070 Hb_000791_050 Hb_000791_050 Hb_000737_010--Hb_000791_050 Hb_004096_220 Hb_004096_220 Hb_000737_010--Hb_004096_220 Hb_000936_090 Hb_000936_090 Hb_000737_010--Hb_000936_090 Hb_000438_010--Hb_004096_220 Hb_000318_170 Hb_000318_170 Hb_000438_010--Hb_000318_170 Hb_000438_010--Hb_007575_030 Hb_000261_310 Hb_000261_310 Hb_000438_010--Hb_000261_310 Hb_003106_110 Hb_003106_110 Hb_000438_010--Hb_003106_110 Hb_004883_020 Hb_004883_020 Hb_007575_030--Hb_004883_020 Hb_007575_030--Hb_000261_310 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_001240_050 Hb_001240_050 Hb_000165_070--Hb_001240_050 Hb_000760_080 Hb_000760_080 Hb_000165_070--Hb_000760_080 Hb_000165_070--Hb_004096_220 Hb_000165_070--Hb_000438_010 Hb_000791_050--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000791_050--Hb_001221_390 Hb_027380_150 Hb_027380_150 Hb_000791_050--Hb_027380_150 Hb_010050_020 Hb_010050_020 Hb_000791_050--Hb_010050_020 Hb_000791_050--Hb_000438_010 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_000936_090--Hb_000438_010 Hb_004864_020 Hb_004864_020 Hb_000936_090--Hb_004864_020 Hb_001522_040 Hb_001522_040 Hb_000936_090--Hb_001522_040 Hb_002411_160 Hb_002411_160 Hb_000936_090--Hb_002411_160 Hb_000803_120 Hb_000803_120 Hb_000936_090--Hb_000803_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.335952 1.61404 3.23982 1.85842 0.11861 0.417543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.252744 0.170422 0 2.13545 2.18621

CAGE analysis