Hb_000737_030

Information

Type -
Description -
Location Contig737: 84884-92811
Sequence    

Annotation

kegg
ID rcu:RCOM_1277270
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012067170.1
description PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q0WQD2
description Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2
trembl
ID A0A067L0P4
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_03099 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56215: 84888-87918 , PASA_asmbl_56216: 88059-88644 , PASA_asmbl_56217: 88771-88912 , PASA_asmbl_56218: 89107-92067 , PASA_asmbl_56219: 90478-90873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000737_030 0.0 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
2 Hb_032990_010 0.0565943121 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
3 Hb_001002_060 0.0623079125 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
4 Hb_001005_030 0.063971874 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_004586_060 0.0639789135 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
6 Hb_000373_080 0.0653698156 - - PREDICTED: serine decarboxylase [Jatropha curcas]
7 Hb_001377_310 0.0663102461 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_000362_170 0.0663573837 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_005460_050 0.0676147 - - COR413-PM2, putative [Ricinus communis]
10 Hb_007062_040 0.0724149371 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
11 Hb_000101_380 0.0733050571 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
12 Hb_012215_010 0.0747770106 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
13 Hb_003186_020 0.0747888873 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
14 Hb_016777_040 0.0751208707 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
15 Hb_000313_220 0.0758282086 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_008568_020 0.0766048718 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
17 Hb_004020_040 0.0766110277 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
18 Hb_000214_050 0.0767217274 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
19 Hb_001089_070 0.0786458955 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
20 Hb_002073_190 0.0791547112 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000737_030 Hb_000737_030 Hb_032990_010 Hb_032990_010 Hb_000737_030--Hb_032990_010 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_001005_030 Hb_001005_030 Hb_000737_030--Hb_001005_030 Hb_004586_060 Hb_004586_060 Hb_000737_030--Hb_004586_060 Hb_000373_080 Hb_000373_080 Hb_000737_030--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000737_030--Hb_001377_310 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_005460_050 Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_032990_010--Hb_004586_060 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_004586_060--Hb_007062_040 Hb_004586_060--Hb_000046_570 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_000373_080--Hb_001377_310 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000373_080--Hb_000362_170 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60688 5.0889 8.17768 7.74213 6.59085 5.76186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55753 4.00982 2.82215 5.58543 5.16878

CAGE analysis