Hb_000739_140

Information

Type -
Description -
Location Contig739: 138299-141340
Sequence    

Annotation

kegg
ID rcu:RCOM_1612220
description proteasome subunit beta type, putative (EC:3.4.25.1)
nr
ID XP_012083566.1
description PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
swissprot
ID O82531
description Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
trembl
ID A0A067KAD1
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_14520 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56287: 138302-141263 , PASA_asmbl_56288: 140602-140974
cDNA
(Sanger)
(ID:Location)		 030_B03.ab1: 139298-141261 , 034_D17.ab1: 138647-141263 , 038_F13.ab1: 138653-141263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_140 0.0 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
2 Hb_009075_010 0.0638372924 - - 60S ribosomal protein L10B [Hevea brasiliensis]
3 Hb_005054_260 0.0752162047 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
4 Hb_005306_070 0.081512271 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
5 Hb_000768_130 0.0927854822 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
6 Hb_001053_140 0.09480202 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
7 Hb_001410_060 0.0965395131 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_000163_050 0.0965545999 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
9 Hb_001979_020 0.0997500319 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_000215_330 0.1065770316 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
11 Hb_000377_120 0.1101622999 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000384_120 0.1135074346 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
13 Hb_005269_080 0.1146718702 - - protein with unknown function [Ricinus communis]
14 Hb_005460_060 0.1166597646 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
15 Hb_003929_150 0.1184879061 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
16 Hb_007441_240 0.1207057238 - - ethphon-induced protein [Hevea brasiliensis]
17 Hb_000771_060 0.1215838539 - - PREDICTED: spermine synthase [Jatropha curcas]
18 Hb_002876_020 0.1217530955 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
19 Hb_003020_150 0.1226984608 - - tropinone reductase, putative [Ricinus communis]
20 Hb_000077_180 0.1230454363 - - -

Gene co-expression network

sample Hb_000739_140 Hb_000739_140 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_000163_050 Hb_000163_050 Hb_009075_010--Hb_000163_050 Hb_009075_010--Hb_005054_260 Hb_001979_020 Hb_001979_020 Hb_009075_010--Hb_001979_020 Hb_000896_040 Hb_000896_040 Hb_009075_010--Hb_000896_040 Hb_000377_120 Hb_000377_120 Hb_009075_010--Hb_000377_120 Hb_005054_260--Hb_001979_020 Hb_003020_150 Hb_003020_150 Hb_005054_260--Hb_003020_150 Hb_000384_120 Hb_000384_120 Hb_005054_260--Hb_000384_120 Hb_005054_260--Hb_000163_050 Hb_000215_330 Hb_000215_330 Hb_005306_070--Hb_000215_330 Hb_000107_300 Hb_000107_300 Hb_005306_070--Hb_000107_300 Hb_005306_070--Hb_001410_060 Hb_003494_050 Hb_003494_050 Hb_005306_070--Hb_003494_050 Hb_005269_080 Hb_005269_080 Hb_005306_070--Hb_005269_080 Hb_007313_080 Hb_007313_080 Hb_000768_130--Hb_007313_080 Hb_154141_030 Hb_154141_030 Hb_000768_130--Hb_154141_030 Hb_000768_130--Hb_000215_330 Hb_003020_330 Hb_003020_330 Hb_000768_130--Hb_003020_330 Hb_000768_130--Hb_005306_070 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_002303_060 Hb_002303_060 Hb_001053_140--Hb_002303_060 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_000189_240 Hb_000189_240 Hb_001053_140--Hb_000189_240 Hb_001053_140--Hb_005269_080 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_001410_060--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0368 14.2767 46.6705 73.5384 8.15431 15.0512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.1925 148.593 56.248 49.5896 35.3938

CAGE analysis