Hb_000739_160

Information

Type -
Description -
Location Contig739: 144689-150314
Sequence    

Annotation

kegg
ID rcu:RCOM_1612240
description DNA binding protein, putative
nr
ID XP_002511726.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID B9RDD7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1612240 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56289: 144714-150338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_160 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_003106_110 0.0869610662 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
3 Hb_000096_210 0.0996067216 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
4 Hb_006634_090 0.1042593066 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
5 Hb_006934_020 0.1071086821 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
6 Hb_002301_370 0.1074365118 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
7 Hb_000417_280 0.1105659249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001008_110 0.1145718941 - - -
9 Hb_011537_020 0.1146783468 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
10 Hb_015306_010 0.116096295 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
11 Hb_000411_050 0.1196154749 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
12 Hb_000438_010 0.1224348684 - - -
13 Hb_001018_080 0.122771383 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000760_080 0.1228655435 - - mutt domain protein, putative [Ricinus communis]
15 Hb_003106_230 0.1249425437 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
16 Hb_000398_140 0.1261233763 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
17 Hb_000424_100 0.1267836125 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
18 Hb_002450_180 0.1286672637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000847_050 0.128859268 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
20 Hb_009193_060 0.1288831898 - - PREDICTED: ureide permease 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000739_160 Hb_000739_160 Hb_003106_110 Hb_003106_110 Hb_000739_160--Hb_003106_110 Hb_000096_210 Hb_000096_210 Hb_000739_160--Hb_000096_210 Hb_006634_090 Hb_006634_090 Hb_000739_160--Hb_006634_090 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_003106_110--Hb_002301_370 Hb_005485_070 Hb_005485_070 Hb_003106_110--Hb_005485_070 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080 Hb_000946_050 Hb_000946_050 Hb_000096_210--Hb_000946_050 Hb_009554_030 Hb_009554_030 Hb_000096_210--Hb_009554_030 Hb_014250_010 Hb_014250_010 Hb_000096_210--Hb_014250_010 Hb_039022_020 Hb_039022_020 Hb_000096_210--Hb_039022_020 Hb_004122_060 Hb_004122_060 Hb_000096_210--Hb_004122_060 Hb_005766_010 Hb_005766_010 Hb_000096_210--Hb_005766_010 Hb_002450_180 Hb_002450_180 Hb_006634_090--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_006634_090--Hb_000847_050 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_006934_020--Hb_000847_050 Hb_002671_060 Hb_002671_060 Hb_006934_020--Hb_002671_060 Hb_006934_020--Hb_006634_090 Hb_001008_110 Hb_001008_110 Hb_006934_020--Hb_001008_110 Hb_004421_010 Hb_004421_010 Hb_006934_020--Hb_004421_010 Hb_000230_360 Hb_000230_360 Hb_002301_370--Hb_000230_360 Hb_000731_210 Hb_000731_210 Hb_002301_370--Hb_000731_210 Hb_001440_010 Hb_001440_010 Hb_002301_370--Hb_001440_010 Hb_031385_010 Hb_031385_010 Hb_002301_370--Hb_031385_010 Hb_001048_100 Hb_001048_100 Hb_002301_370--Hb_001048_100 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.5572 8.15602 9.50464 9.51846 0.338735 0.327507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0908289 0.095278 0 11.6428 5.63724

CAGE analysis