Hb_000739_190

Information

Type transcription factor
Description TF Family: LOB
Location Contig739: 164646-167197
Sequence    

Annotation

kegg
ID rcu:RCOM_1612270
description LOB domain-containing protein, putative
nr
ID XP_002511729.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID O81322
description LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2
trembl
ID B9RDE0
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_190 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_003427_070 0.078597033 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
3 Hb_030360_010 0.0805040942 - - -
4 Hb_000684_110 0.0858759881 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
5 Hb_039075_010 0.0925857468 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_000310_040 0.0975962466 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
7 Hb_001110_060 0.101403619 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
8 Hb_000139_520 0.1040404182 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
9 Hb_084304_010 0.1046088758 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
10 Hb_084812_010 0.1056034338 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
11 Hb_005111_020 0.1059406442 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
12 Hb_001417_090 0.1059574574 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
13 Hb_000000_320 0.1077721123 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
14 Hb_000861_060 0.1082070245 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
15 Hb_004531_130 0.1128987201 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
16 Hb_000227_300 0.1163902551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000922_050 0.1179671385 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
18 Hb_000139_390 0.1189524271 - - -
19 Hb_016911_010 0.1192524574 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
20 Hb_050898_030 0.1215840941 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000739_190 Hb_000739_190 Hb_003427_070 Hb_003427_070 Hb_000739_190--Hb_003427_070 Hb_030360_010 Hb_030360_010 Hb_000739_190--Hb_030360_010 Hb_000684_110 Hb_000684_110 Hb_000739_190--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_000739_190--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000739_190--Hb_000310_040 Hb_001110_060 Hb_001110_060 Hb_000739_190--Hb_001110_060 Hb_084304_010 Hb_084304_010 Hb_003427_070--Hb_084304_010 Hb_000922_050 Hb_000922_050 Hb_003427_070--Hb_000922_050 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_000684_110 Hb_003427_070--Hb_039075_010 Hb_030360_010--Hb_039075_010 Hb_004112_080 Hb_004112_080 Hb_030360_010--Hb_004112_080 Hb_030360_010--Hb_000310_040 Hb_011628_010 Hb_011628_010 Hb_030360_010--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_030360_010--Hb_004705_060 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_004112_070 Hb_004112_070 Hb_000684_110--Hb_004112_070 Hb_000684_110--Hb_001110_060 Hb_000139_390 Hb_000139_390 Hb_000684_110--Hb_000139_390 Hb_039075_010--Hb_000310_040 Hb_016911_010 Hb_016911_010 Hb_039075_010--Hb_016911_010 Hb_039075_010--Hb_004112_080 Hb_000333_140 Hb_000333_140 Hb_039075_010--Hb_000333_140 Hb_039075_010--Hb_011628_010 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_004732_070 Hb_004732_070 Hb_000310_040--Hb_004732_070 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060 Hb_001408_080 Hb_001408_080 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.247249 0.506406 1.41013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0302099 0.144032

CAGE analysis