Hb_000739_200

Information

Type transcription factor
Description TF Family: LOB
Location Contig739: 174212-177734
Sequence    

Annotation

kegg
ID cic:CICLE_v10021992mg
description hypothetical protein
nr
ID XP_006445237.1
description hypothetical protein CICLE_v10021992mg [Citrus clementina]
swissprot
ID O22131
description LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2
trembl
ID A0A067HD70
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036534mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56292: 175608-177454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_200 0.0 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
2 Hb_000291_160 0.1393907228 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
3 Hb_002192_030 0.1860394573 - - conserved hypothetical protein [Ricinus communis]
4 Hb_028207_060 0.1875869974 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
5 Hb_026740_020 0.1890437386 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_183610_010 0.1934480508 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
7 Hb_002660_110 0.1947763228 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
8 Hb_003910_010 0.1960590625 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_001999_100 0.2008858932 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
10 Hb_002760_050 0.2016802939 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003964_020 0.2055082498 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
12 Hb_000193_300 0.2060077104 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
13 Hb_000226_070 0.2073933311 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
14 Hb_000984_310 0.2084291636 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
15 Hb_026048_050 0.2085669067 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
16 Hb_000311_040 0.2094927858 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
17 Hb_000300_520 0.2141856333 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
18 Hb_004117_120 0.2142524176 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
19 Hb_005183_170 0.2149070372 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
20 Hb_000429_050 0.2167347007 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000739_200 Hb_000739_200 Hb_000291_160 Hb_000291_160 Hb_000739_200--Hb_000291_160 Hb_002192_030 Hb_002192_030 Hb_000739_200--Hb_002192_030 Hb_028207_060 Hb_028207_060 Hb_000739_200--Hb_028207_060 Hb_026740_020 Hb_026740_020 Hb_000739_200--Hb_026740_020 Hb_183610_010 Hb_183610_010 Hb_000739_200--Hb_183610_010 Hb_002660_110 Hb_002660_110 Hb_000739_200--Hb_002660_110 Hb_000291_160--Hb_002660_110 Hb_000291_160--Hb_026740_020 Hb_001999_100 Hb_001999_100 Hb_000291_160--Hb_001999_100 Hb_001217_010 Hb_001217_010 Hb_000291_160--Hb_001217_010 Hb_000291_160--Hb_183610_010 Hb_007286_020 Hb_007286_020 Hb_002192_030--Hb_007286_020 Hb_131035_010 Hb_131035_010 Hb_002192_030--Hb_131035_010 Hb_000890_230 Hb_000890_230 Hb_002192_030--Hb_000890_230 Hb_086639_080 Hb_086639_080 Hb_002192_030--Hb_086639_080 Hb_027760_070 Hb_027760_070 Hb_002192_030--Hb_027760_070 Hb_000193_300 Hb_000193_300 Hb_002192_030--Hb_000193_300 Hb_000152_370 Hb_000152_370 Hb_028207_060--Hb_000152_370 Hb_003998_010 Hb_003998_010 Hb_028207_060--Hb_003998_010 Hb_007445_010 Hb_007445_010 Hb_028207_060--Hb_007445_010 Hb_001662_050 Hb_001662_050 Hb_028207_060--Hb_001662_050 Hb_001488_220 Hb_001488_220 Hb_028207_060--Hb_001488_220 Hb_000413_070 Hb_000413_070 Hb_028207_060--Hb_000413_070 Hb_026740_020--Hb_000193_300 Hb_000413_020 Hb_000413_020 Hb_026740_020--Hb_000413_020 Hb_000138_060 Hb_000138_060 Hb_026740_020--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_026740_020--Hb_002289_150 Hb_005192_010 Hb_005192_010 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140 Hb_004117_120 Hb_004117_120 Hb_183610_010--Hb_004117_120 Hb_005183_170 Hb_005183_170 Hb_183610_010--Hb_005183_170 Hb_000984_310 Hb_000984_310 Hb_183610_010--Hb_000984_310 Hb_001217_040 Hb_001217_040 Hb_183610_010--Hb_001217_040 Hb_000482_020 Hb_000482_020 Hb_183610_010--Hb_000482_020 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_000622_350 Hb_000622_350 Hb_002660_110--Hb_000622_350 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303406 0.161167 0.0480594 0.801053 0.0580574 0.109543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0712689 0.0560354 0.10097 0.159 0.112011

CAGE analysis